Scaffold Ga0310130_0001601

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0001601
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11993
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (69.70%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003643	Metagenome / Metatranscriptome	475	N
F007363	Metagenome / Metatranscriptome	352	Y
F024549	Metagenome / Metatranscriptome	205	Y
F078406	Metagenome / Metatranscriptome	116	N
F084246	Metagenome	112	Y
F103128	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0001601_10069_10341	F078406	AGGA	MLSTATALIKATEEAIFDEECMSFAQQFCHHKDELTPEYFAKSIYLYSTMIASLAIDKAMKVLLTQEQVEELCSAIAELEQMENEVLNGK
Ga0310130_0001601_34_261	F003643	AGGAGG	MKEDLNQDGKVTMQEKILAALASYGRHFLGAAIALYMTGNTDPGDLIKGGIAACLPVILKALNPNESSFGFTKKV
Ga0310130_0001601_4530_4772	F103128	N/A	MNNAKLKYQNYYDDTAMATGALEWITAYLEKLLGNCQNVSEGKCDTWWRHEDCNSLMAILADLTGDEKYTIKPMKANSWD
Ga0310130_0001601_5720_5896	F084246	N/A	MDKIEDTVCFSYKVEMIVQILAENEESARMQLDDKGGYVTTRKVRLMDSVPIYNGVKK
Ga0310130_0001601_7406_7618	F007363	AGGA	MKTYSIVDLLVDQYYAPTSLRRRFNGGIINYAEKRENVYLSEGYEAFAIRYRPTGSIQDQWATVAVKVAD
Ga0310130_0001601_7971_8171	F024549	GAGG	MYKLFTYYDGKLEFTANFSDALEAFEAFARCKDVGFAIENATYNLEMPTGKMYTKNFDRIGLVSHR