Scaffold Ga0310130_0001583

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0001583
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12093
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017123	Metagenome / Metatranscriptome	242	Y
F036212	Metagenome / Metatranscriptome	170	N
F074813	Metagenome / Metatranscriptome	119	Y
F088765	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0001583_4680_5000	F017123	GGA	MEMKMSDSKISFYMSIGSDEDEEGKKHNADYGYPLSHLVSIDATYDSGITWLTLLEKACEAIGAYYGYDVKEKVFVKQFDKIVNIFGHDDPSHFSTDSDADANPAT
Ga0310130_0001583_6006_6323	F036212	AGGAGG	MATTDTIVYLEWVDAVASSGWQLKGNGSLARCKSVGFMTHETDEEVHLAAAIGENDCNAVMIIPKSWISNWTEIDIEAFKRKKQRKTAAKASSTKAKRHFQPKRT
Ga0310130_0001583_9607_9750	F088765	GGA	MDCELFDFEKFAEMVAFQASEDRLDRCIEALERRGYADAADIIRGEG
Ga0310130_0001583_9782_9958	F074813	AGGAGG	MAEVTNVEEHDDGSATLHFDLTDEEVKMLLQWGIKEAIKLAYHEANKFDWGLKNETNT