Scaffold Ga0310130_0001567

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0001567
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12200
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (38.46%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015201	Metagenome / Metatranscriptome	256	Y
F020341	Metagenome	224	Y
F073280	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0001567_4275_4391	F015201	GGAGG	MNKALIVYLVDKRKKMARKDVESKHATTELKKQSAATF
Ga0310130_0001567_4571_4921	F020341	GGA	MTIVVYDVVRYVTQLKSLMKGFALTEQPTKSAAYWIAVYAKDNEDEPIDVYKKVLSYKPGQDKELLMIRHCNSVMKINQNIWEMLVHQGPTEIPDSGDQIVLRLSKEKFKGSAQVN
Ga0310130_0001567_6136_6456	F073280	GGAGG	MTDHLTSRAQCLIEEFEYGESVREGIANVLLHLAVTWDNYSDGDEYWHGVTTDTLEELATELTAPTLLDRALAGDRAAARQFLQEAGFVDEHGQLTAPYRPDNFDG