Scaffold Ga0310130

Basic Information
Taxon OID	3300034073 Open in IMG/M
Scaffold ID	Ga0310130_0001492 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034073 Open in IMG/M

Scaffold ID

Ga0310130_0001492 Open in IMG/M

Source Dataset Name

Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12659
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (28.57%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

12659

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (28.57%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.784	Long. (^o)	-98.26	Alt. (m)	Depth (m)	2896
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.784

Long. (^o)

-98.26

Alt. (m)

Depth (m)

2896

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F017470	Metagenome	240	Y
F044452	Metagenome	154	N
F079983	Metagenome / Metatranscriptome	115	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0001492_2962_3510	F017470	N/A	MSDLMMRNQILGLRRAGMSVEEVSAALEVDVMVVRLALESVGGSSVLRAEARKEDPDDITDDVSEAEAKEMMGIIKNIARDEESGVYARLNAAKYAHGAKRGYHKRHLDLNVGSGELLLKINEAYASASMRARAALGGQSLTAKEITIEAPITVEASSVESQPTDHTTQSEPAAPKPRPFKL
Ga0310130_0001492_388_648	F044452	AGGAG	MTNRCLRCLQIIDPERKALGFSRCISCQPQWSYKGALNFGHKTGGSVQPMHPDAFKVHKRVTARSAKGTNGKAFQTGTCVINIKDA
Ga0310130_0001492_8917_10215	F079983	N/A	MPATWDLPRSSGLWNQQDIANYNRLPIWMAIQQTKKMQMWSRWKDMFPKIKWKQNMGDILQGVIAENSPIVNQVHRPKNITELPLKTVASTWERTNQSRVKRHNFESPQFNFLPSFRDFRTKQLKFAAEDLSKQIAVGYDFFTRDNVFQNSPFVYIVGNTTTGELPLVNAPAALPTDTSAIKDTAWVAAAAAKIGSDDNGFLSYRQIQAVASYAKNYLMIPPMEGMQSGAPADNEMSKGKYVLLGGSEIYEGLAFDTHVLNTKPLAMNLLNSSFQGAIGPNIIFREEFYPLRFAENGTMPAPEIELLLPDSGYSTPNATRQTVINPAYAAAPIGVAFLIGYNAYEQIDVGPPPSEFTGASINGKRFNQLTWNGEVRLTDNVLVNYGSNNLDTNKYGEFLQLIADTVLGIIGNTNRNVIPIIYRRQIAPSLFV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310130_0001492

Overview

Ecosystem & Geography

Associated Families

Sequences