Scaffold Ga0310130_0001455

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0001455
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12884
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (58.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004583	Metagenome / Metatranscriptome	432	Y
F004669	Metagenome	428	N
F006220	Metagenome	378	Y
F011390	Metagenome	291	Y
F048994	Metagenome	147	N
F057375	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0001455_1125_1397	F004583	AGGAG	MKNVRNSDRLREILVSTRHQIVSLKDIQIDLLRSNAKASTEIATQISALEEVYKHQLSLVEMTESTEPKSRGWFSGQIKSKEDRLANIMD
Ga0310130_0001455_147_314	F006220	AGG	MKKFKKFVEELAIASGTEMMRASQMRPTSFKDKSKYTRKTKHKNRQDKNSGDSYL
Ga0310130_0001455_4226_4498	F057375	AGG	MAETVYFVNASDVFEAIELGDFEQAQFLDQFTYGDSLTDLTLIKKQTFINRLVKFIADCEDVYEKDVVMQNLKEYNFGLLDCIKHVNIEE
Ga0310130_0001455_467_610	F048994	AGGAG	MIGLVKIEFGFMNLYVNGVCVVSTSTIAGIRHAVKRYNLQGYMMEAE
Ga0310130_0001455_4867_5166	F011390	GAG	MKDMEITTTNYGVCKVKKHKYQTNGNLALSLVDENGEPVVYITTNIFPMAEDEFCANYYNMGATLWNDIVTSGLFEMTGEKVPSGYCEYPVCKLVKELA
Ga0310130_0001455_8521_8988	F004669	N/A	MENTMHLWEIKNFQSTSVKSLFVGRTANGQDCIACAWNSSELYVFAYEGIVDTFLWALESFQSVGQAMAYAKLKNGMEDRSYSLPYHVTMEQRTHNQLYRFQLQYLYIFEGTLEIHSNLCDDTPENAIKNLISRGDIEAENSRLIDIFRKREVCA