NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0001455

Scaffold Ga0310130_0001455


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0001455 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12884
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (58.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004583Metagenome / Metatranscriptome432Y
F004669Metagenome428N
F006220Metagenome378Y
F011390Metagenome291Y
F048994Metagenome147N
F057375Metagenome136N

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0001455_1125_1397F004583AGGAGMKNVRNSDRLREILVSTRHQIVSLKDIQIDLLRSNAKASTEIATQISALEEVYKHQLSLVEMTESTEPKSRGWFSGQIKSKEDRLANIMD
Ga0310130_0001455_147_314F006220AGGMKKFKKFVEELAIASGTEMMRASQMRPTSFKDKSKYTRKTKHKNRQDKNSGDSYL
Ga0310130_0001455_4226_4498F057375AGGMAETVYFVNASDVFEAIELGDFEQAQFLDQFTYGDSLTDLTLIKKQTFINRLVKFIADCEDVYEKDVVMQNLKEYNFGLLDCIKHVNIEE
Ga0310130_0001455_467_610F048994AGGAGMIGLVKIEFGFMNLYVNGVCVVSTSTIAGIRHAVKRYNLQGYMMEAE
Ga0310130_0001455_4867_5166F011390GAGMKDMEITTTNYGVCKVKKHKYQTNGNLALSLVDENGEPVVYITTNIFPMAEDEFCANYYNMGATLWNDIVTSGLFEMTGEKVPSGYCEYPVCKLVKELA
Ga0310130_0001455_8521_8988F004669N/AMENTMHLWEIKNFQSTSVKSLFVGRTANGQDCIACAWNSSELYVFAYEGIVDTFLWALESFQSVGQAMAYAKLKNGMEDRSYSLPYHVTMEQRTHNQLYRFQLQYLYIFEGTLEIHSNLCDDTPENAIKNLISRGDIEAENSRLIDIFRKREVCA

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