Basic Information | |
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Taxon OID | 3300034073 Open in IMG/M |
Scaffold ID | Ga0310130_0001455 Open in IMG/M |
Source Dataset Name | Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12884 |
Total Scaffold Genes | 36 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (58.33%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Oklahoma | |||||||
Coordinates | Lat. (o) | 35.784 | Long. (o) | -98.26 | Alt. (m) | Depth (m) | 2896 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004583 | Metagenome / Metatranscriptome | 432 | Y |
F004669 | Metagenome | 428 | N |
F006220 | Metagenome | 378 | Y |
F011390 | Metagenome | 291 | Y |
F048994 | Metagenome | 147 | N |
F057375 | Metagenome | 136 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0310130_0001455_1125_1397 | F004583 | AGGAG | MKNVRNSDRLREILVSTRHQIVSLKDIQIDLLRSNAKASTEIATQISALEEVYKHQLSLVEMTESTEPKSRGWFSGQIKSKEDRLANIMD |
Ga0310130_0001455_147_314 | F006220 | AGG | MKKFKKFVEELAIASGTEMMRASQMRPTSFKDKSKYTRKTKHKNRQDKNSGDSYL |
Ga0310130_0001455_4226_4498 | F057375 | AGG | MAETVYFVNASDVFEAIELGDFEQAQFLDQFTYGDSLTDLTLIKKQTFINRLVKFIADCEDVYEKDVVMQNLKEYNFGLLDCIKHVNIEE |
Ga0310130_0001455_467_610 | F048994 | AGGAG | MIGLVKIEFGFMNLYVNGVCVVSTSTIAGIRHAVKRYNLQGYMMEAE |
Ga0310130_0001455_4867_5166 | F011390 | GAG | MKDMEITTTNYGVCKVKKHKYQTNGNLALSLVDENGEPVVYITTNIFPMAEDEFCANYYNMGATLWNDIVTSGLFEMTGEKVPSGYCEYPVCKLVKELA |
Ga0310130_0001455_8521_8988 | F004669 | N/A | MENTMHLWEIKNFQSTSVKSLFVGRTANGQDCIACAWNSSELYVFAYEGIVDTFLWALESFQSVGQAMAYAKLKNGMEDRSYSLPYHVTMEQRTHNQLYRFQLQYLYIFEGTLEIHSNLCDDTPENAIKNLISRGDIEAENSRLIDIFRKREVCA |
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