Scaffold Ga0310130_0001404

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0001404
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13161
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (20.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002333	Metagenome	569	Y
F002738	Metagenome / Metatranscriptome	533	Y
F025982	Metagenome / Metatranscriptome	199	Y
F038646	Metagenome	165	Y
F041147	Metagenome / Metatranscriptome	160	Y
F058089	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0001404_2925_3179	F058089	N/A	MSTQPEDQFTFLYEDGKRKVLHEFQGIATDEIVDEMIQFLRGVGHLEINIIERLHEISRQYLELYEATSTIKLPMQQDDLDEVE
Ga0310130_0001404_4933_5883	F002333	N/A	MTTQLQQQELNPAQALIYTRTNISRAFQGFDDTEIAGIYLRGDDCLVVRRDGSEQTYPRELIKLAFTNYTNRLKDFFSYLGPNYRGPSVWHNNAYIMFKGWHYTHALGHLTSNAKLQAHWADKFIHLSDSNKLITLLQSDQTDIGHLVAPDGLRLTNRPIDLDSDMEEEGSGVSPVTPEPYCSCGSFQRQLLNVSEFQAEIQGFKPWCIHLSWFNKYRELLCKRTEARNASPSGTPEKCVAWWYAPPKDSISDGRFVLLYTNHGAQAPLSHWRTYKPNEVFTQHHAWDLFFNMMEASYVPFPGISLPQLKSAIKKQ
Ga0310130_0001404_6067_6561	F038646	N/A	MTMTDDIFGYARLVPHSRLWKSSSMTDDTLEYARQLVANQPMKLPAHRNYHLEIPDDLHWELVRLGAELKMDYEVYAEEILKMHAEDAISKRIVARAYNDPSWVYKLNLECIEEEDGSMTIHIEWDEKDPDLQYWTNLGSKGQENLILTALRSACNSVLSNHDN
Ga0310130_0001404_6551_6967	F002738	N/A	MTIDTYGLTTEQYTEFFHKNLRFAAKLYLDTCNILSSEGVGNVDFKTVLDMYQEAVYTTNDDCRRYQKSNNPEALKENDVYGVVSSREELTQMIETLVTYTEALDAKLEALTEYVNNLVTVTTAGLEGIATTLDDKVD
Ga0310130_0001404_7343_8056	F001018	N/A	MTQITQAKLKDLSIIKLYEHYRALEQSLPLLTPESQELAKAELESCANLRSEKVDRVYYAMAAHEDALERIKKEGDLITQAKRHHESQLRSLKGLLNYLRRVLPQDSNKITGRNYQFTLVKKKDLTVEISSDPEFWHTEERELYCVTEEVTTTKRVVLRSMSGEILDERIEPKTTTKVLPNLDAIRSAYQEGKHLPTGVKVLQEYSVRSKRIFAEPKLDMVSSEYPGELLPEDPGSD
Ga0310130_0001404_8079_8303	F025982	N/A	MSCHEHAIKDFDLQLEMNGLQMAMLMEEGKVLDYHMSEYEDLEQKKLKLLVGKRFHQNAANAYWYHMQREKAGK
Ga0310130_0001404_9452_9844	F041147	N/A	MPLLLMDTSQEPVDTIKQWQDWYRKHRIVAEIDVPLVTKESRENLHETSNATTTLDGSNNLLTDYCKAMSFQKAKEYFADTVAEFANELSGKELYKAFYAAAMDNMECVEKEYNKAKQLVDMLRCNNVAP