Scaffold Ga0310130

Basic Information
Taxon OID	3300034073 Open in IMG/M
Scaffold ID	Ga0310130_0001375 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034073 Open in IMG/M

Scaffold ID

Ga0310130_0001375 Open in IMG/M

Source Dataset Name

Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13371
Total Scaffold Genes	40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (35.00%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (55.56%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

13371

Total Scaffold Genes

40 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (35.00%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (55.56%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.784	Long. (^o)	-98.26	Alt. (m)	Depth (m)	2896
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.784

Long. (^o)

-98.26

Alt. (m)

Depth (m)

2896

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007359	Metagenome / Metatranscriptome	352	Y
F010746	Metagenome / Metatranscriptome	299	Y
F014486	Metagenome / Metatranscriptome	262	Y
F016115	Metagenome / Metatranscriptome	249	Y
F020860	Metagenome / Metatranscriptome	221	N
F022820	Metagenome / Metatranscriptome	212	Y
F035200	Metagenome / Metatranscriptome	172	Y
F037078	Metagenome / Metatranscriptome	168	N
F086551	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0001375_11285_11707	F037078	N/A	MKNNQLNITMQPFGNTTAFLLEGDKNHIENFHNAMYNHSATNGELHDMGNGKAFYFYAQPEAVLEAMTKVALYALCNKIKAKGLKGGLLSLAKQKAQDKFDAIKDGRFLRTAISTDVFNLGSITAEKPSDYCGAISSGRD
Ga0310130_0001375_1649_1804	F020860	N/A	MEITKAKKLAEGGYALYAIDPKTKTETQVGYIGGNLSLEAWIPKGVKIENS
Ga0310130_0001375_1791_2150	F016115	AGGAG	LKILEESFTSKGFKLQQVKRDGDIAIYKKQLDDPECENYHYEVVAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWAFTCTSIEDANKRFNELQEKLTNYNATSILPSGEKRGRGRPRKIA
Ga0310130_0001375_2182_2418	F010746	N/A	MTYKCAVSGEAIPPERVEALQVLGVPEALWTKKEYSQVKKLKAVYAGDDGSNDIVICDNVDGGSLFDNEVAVEVENDI
Ga0310130_0001375_2408_2566	F035200	GGAGG	MTSKFIVLRDGVRVSEDMHESEGQAEQEANFWREIIKRWPDGTKVTIKKIGG
Ga0310130_0001375_3349_3744	F007359	AGGAG	MKHIKLYKQNLGAHWVIGIKGSKDRIKQFHNRVYNWGGTNGKLKWMSRDFAYFWITMDKLERVMFKYVMNGITDKLGEKFRGSKGGLKEVVMNRVMNTINKIPLENFVRTEQVEHTYSLGQVSAEKLDTDS
Ga0310130_0001375_4132_4293	F022820	N/A	MKHENRISKIIEKRILKDEDPKLIAQIDKYLAELEVVFVKWAKAHPNWKESEE
Ga0310130_0001375_7005_7154	F014486	GGAG	MNIEKLLNENLESFYPWSDNDNPPLDAGKNFLQKEKELDEFFEGWRASM
Ga0310130_0001375_9342_9545	F086551	AGGA	MNIQINPELYENKNICRYGHDKLLVKIFPSTIGWKTKTATAEILEGEDKGKWTTIYMRKGLYPVDAQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310130_0001375

Overview

Ecosystem & Geography

Associated Families

Sequences