Scaffold Ga0310130

Basic Information
Taxon OID	3300034073 Open in IMG/M
Scaffold ID	Ga0310130_0001372 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034073 Open in IMG/M

Scaffold ID

Ga0310130_0001372 Open in IMG/M

Source Dataset Name

Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13382
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (27.78%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

13382

Total Scaffold Genes

36 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (27.78%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.784	Long. (^o)	-98.26	Alt. (m)	Depth (m)	2896
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.784

Long. (^o)

-98.26

Alt. (m)

Depth (m)

2896

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002455	Metagenome / Metatranscriptome	557	Y
F010317	Metagenome / Metatranscriptome	305	Y
F027823	Metagenome / Metatranscriptome	193	Y
F028801	Metagenome / Metatranscriptome	190	N
F029718	Metagenome / Metatranscriptome	187	Y
F038644	Metagenome / Metatranscriptome	165	Y
F045698	Metagenome / Metatranscriptome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0001372_3979_4332	F002455	N/A	MTDNRTYYYDIYGKMEPDYESMVAYLLDEGVLFVTSAIDRCTQKECLGLYILINDYFVPASDAESVTYDELPKLFEMYKEKQWNGVSQFVADKRGIPNIYWKDKGSAFQNKIMKNSE
Ga0310130_0001372_5130_5429	F028801	GGA	MKIKVKNIKIPRSFPYKDYTCKIDGHKFHAMLGEDGEGKLIAGIDKKEPIYNYEDTLEHWMLEAQKMNDFYHNLVDFLKEVKYIHNQDKKLYDTTNKRT
Ga0310130_0001372_7114_7383	F029718	GAG	MKFKVSYYDYDSDKYVTKDCDRMEFSNGEFHFYPVDNPVKMYKSVVIDHPKVSIHQNKDRMKIIVTGYQYAGEGNYERTETIIENVRED
Ga0310130_0001372_731_913	F045698	N/A	MNLPPKQPDVIDLTKSIRETHYQLQLDYQALMLKATTLQAENEELKARLDKIAEKIQLDI
Ga0310130_0001372_8614_8952	F027823	N/A	VNITDAKDVPCVSQTNLWKGCFEAHFMSGREIDVKYPILNTKWKYSHHKLRDDYDGYYYAYEKDIGTGIMFDPWLRELKVNMRISDDVYKTKMYHTTVESNPILLVLYKKKD
Ga0310130_0001372_8959_9150	F038644	N/A	MRAIKIKDLPNGPWREYALEAQRRGIEILGADILNGTDITLIGAIDLIRELNERLTKLETKSN
Ga0310130_0001372_9147_9443	F010317	N/A	MKSIYIEKLAEVPGGLPARSMEEHIMGKPNYDNYSSIPIEYNLEGVLSYDIEVGKPVVVGRTKRNGVEAYGVFSTSTVTEVGNNYFKTRNSVYSYKFL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310130_0001372

Overview

Ecosystem & Geography

Associated Families

Sequences