Scaffold Ga0310130_0001365

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0001365
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13460
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (25.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015587	Metagenome	253	Y
F021097	Metagenome	220	Y
F029735	Metagenome	187	Y
F056536	Metagenome	137	N
F095396	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0001365_1199_1447	F056536	N/A	MLCYYPCEGATERITWHGGESTMLHYQVQVDDYKGDPDWIERYSQTLGGGIPCGTKELLAAMSDYYQYISTMHLDTLAGTIF
Ga0310130_0001365_2690_2896	F095396	GGA	MNPKNRAERVVALDAITEEAEKLAASGADPLTVKSFTVGARKELADQRPDTEQYFDAAVAAKKAKNNF
Ga0310130_0001365_6206_6784	F029735	N/A	MAKDHRLALDRYIDYAKDPFLKKRQVNFDDSFASKPSSGAAPWMPSRFEQSDLLRRIQTRKLRLNPGLNFVGDTPEEYEVFADIGRFVRKESYDFNEGRALTTLRPEDQPGFSPVWVEAYRISPTVNPDKRASNPMPRMTNPDPKGYMMASAEKRALNEVEDNKSVAQLLNKPSEEDSKETLKKNDEKPEKA
Ga0310130_0001365_710_913	F021097	AGG	MRNNHFKDSCVALILGTGLGLLASVGVQKVLNRHYQTTCHDRPGHNLIYVQGFLGDTYYCLKAKSML
Ga0310130_0001365_916_1104	F015587	N/A	MTKLNIRKNIAAALFNTAAAIDNAKLPTKEDIGTKVNEYRLRAAALIMPNDMAFVITPKQGN