Scaffold Ga0310130_0001329

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0001329
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13792
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (77.42%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010247	Metagenome / Metatranscriptome	306	Y
F013082	Metagenome	274	Y
F019968	Metagenome / Metatranscriptome	226	Y
F024771	Metagenome	204	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0001329_1804_2037	F013082	AGGGGG	MKTVQQEINRLLLESTTNKWIVSNEAPYYYDLCSVKDKTITLDDFYKSFPYHNPDINCEYWQTQHNRWKEIWNQESK
Ga0310130_0001329_3073_3573	F010247	AGGAG	MNVQGVIKYVYDNRLGKDGTANKFPNFKFKVGEQEIVLWSSILHPAIAKGKNVSVTCGASKKNGSLFVLTKEDKSPMIQELPTAKPDTSFNVDDFESENFNEAVTTIEKEMASSSAPSKGFNKDEYMFTMALLKSGIESGKIGVTKEEIDLKIKDYKFLFQMNFHN
Ga0310130_0001329_4386_4907	F024771	GAG	MNEKKYINNFNEQSYENRTTNYLNISEDRFVQYCNSRGYLYRKLGLNAVSDSQSFAESVIPLFAKLPTLIKAFPDYFVYAPKEAHKQEQFFVELKNATWEHGKTLTKIKVRDVKRYIYFEQAFTNYHTKFTICFPLADKIIFKSVDQILKLLPKSQLKSFPNDGIEYFEVQLS
Ga0310130_0001329_693_860	F019968	AGAAGG	MRNTGVICSMSYYEMKLMTAVLSRILLDNEIRGEHTKKRITTLINKLNNMMTKQC