Scaffold Ga0310130_0001272

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0001272
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14313
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (45.45%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001807	Metagenome / Metatranscriptome	631	Y
F003601	Metagenome / Metatranscriptome	477	Y
F007026	Metagenome	359	Y
F020342	Metagenome / Metatranscriptome	224	Y
F055679	Metagenome / Metatranscriptome	138	Y
F091979	Metagenome	107	N
F095396	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0001272_10309_10503	F001120	AGAAG	MKKSHVSFDKTIAGFNVTERGVRSYSKSIKLGPLQVTLNARASGVRGTIGIPGTGVSLPNIKLI
Ga0310130_0001272_10732_10917	F020342	N/A	MSAYVNYLNMFDRINLAACAQRRATDNLLDSNRWEGEYDTARLWMKYRLIKTTHHSYVED
Ga0310130_0001272_10917_11177	F001807	GGAGG	MTVLAIEHTSFTDTHVTVTAVVDDMRLLYRATRFEPEEWAPALCQTTIELDPEEPIPLDEDGFCSYLDQLDPHWQLVDTSDYDLDS
Ga0310130_0001272_13555_13773	F003601	AGG	MTDYTDDQLLAMAMANIGEYITDNSPQYILIEDDPRNEDDYDTWSYGTEPLPHDHTWHSTAITVDVSPSDPG
Ga0310130_0001272_3662_3868	F095396	GGA	MNPKNRAERVVALDAITEEAEKLAASGADPLTVKSFTVGARKELADQRPDTEQYFDAAVVAKKAKNNF
Ga0310130_0001272_4998_5300	F055679	GGAG	VIDLTTGWVPLTTGWVPHPCIPGGFHLVYIDNLVGEISIVTGPKGSGLMAANDPGAETTYEAWFPGMCDPTGYLTLAELQGIIKFMRQREQERLAWQDED
Ga0310130_0001272_9382_9609	F091979	AGGA	MLLAGRYAMANSPFLQGWQQEYMKAHGSMPPQDKVMDFLTSVVRNESIPIQNKQAELRLLDQMQRFTPDVRNVVG
Ga0310130_0001272_9666_9941	F007026	N/A	MAYPEINWTKNEYKQLEQALDILKAVIERESKRHQMDEHLVPGDNDVVQEAIGLLEEIIDYDPTPNEPGEPPMTMNEMHSAAWKEHQEMHR