Scaffold Ga0310130_0001250

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0001250
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14458
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000369	Metagenome / Metatranscriptome	1222	Y
F004006	Metagenome / Metatranscriptome	457	Y
F008245	Metagenome / Metatranscriptome	336	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0001250_11860_12396	F000369	AGGA	MDIELADHFDRMNKVVEELLKGNNPTQIASVTGFKRAEVLEYIDEWKQVVRSDSGARDRAKEAISGADQHYAMLIKEAWRTVEDADQAGQLNIKATALKLIADIEGKRIGMLQEVGLLDNAELATQLAETERKQDILVKILKEVTATCPKCKLDVAKRLSQITGIVEPVEIIEEVSGS
Ga0310130_0001250_6427_6639	F004006	AGGAG	MTEDIEGLIQSVSINQILVAILEEHKSITVPTIKFLDAAQTDKELVIDYDETVPSFTFSLRNKIEQPRNS
Ga0310130_0001250_8872_9207	F008245	AGG	VSDKNTLELISDITEFNELHQFMNDEQLDKALAIVVKLLMNPDVPAAKAPNLIIELQAMSTKFAMMAAVYSTIAKDKAGTANNNKKNVYYSAKESIDKLVDALKYVVRYNG