Scaffold Ga0310130

Basic Information
Taxon OID	3300034073 Open in IMG/M
Scaffold ID	Ga0310130_0001148 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034073 Open in IMG/M

Scaffold ID

Ga0310130_0001148 Open in IMG/M

Source Dataset Name

Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15280
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (62.50%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

15280

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (62.50%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.784	Long. (^o)	-98.26	Alt. (m)	Depth (m)	2896
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.784

Long. (^o)

-98.26

Alt. (m)

Depth (m)

2896

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008616	Metagenome / Metatranscriptome	330	Y
F008811	Metagenome / Metatranscriptome	327	N
F023328	Metagenome	210	N
F050985	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0001148_1_414	F050985	N/A	TENDPWQTPPDTDLSQNKGKISPETPAPISGQGQGLEMGYFGSYRVATEKQINFLHSLCKRIYTDWDKEKLLKYLQFLSKEQEFSKLEFAPYTIVKNQLDQQQQLADNLSAWLNASRLPSSHEQAETAAADWKTEQF
Ga0310130_0001148_10666_11895	F023328	N/A	MTVYTPTYRVTIAGVVQTSVILSGGTITYGRNDFFEPTQPSYCNIELLNLDGASPVVELLDTVLIEVTDSLGSYIKLFTGEVSGVYNSFNGAGLGGEPNTLQIQAIGALGLLVKRTAGAVSYPEELDGARIQRILEETLFVAWEDLSNTLTWNDFTTETWANYGVQGIDTIDAGRYEVLARNPEIDQASNLTDLTQQSGLGYLYDTADFEIGYADAERRSENYATNLIELNADLVNADIQTRLQTADITNSVIIQYDDPIAEEAAQNDTSINNYGLLQEIRSTILAQQLDAQEQAVNFVNYRGTPRTSLEAISVNLANDGMTNTVRDDLLGVTMDTLLYLDNIPIGLIAEGYFEGFVEGWTWTLGRRNLELTMSVSNSIYSTLDVQWEDYNALIQWQNLDNTTRWLDVI
Ga0310130_0001148_8082_8489	F008811	AGG	MATTILSGRSLTLTIATKNYSEQILDSAINFDTERLTFDTLAGKAYKYIDSNVTLDINFLNDAGKSPDSLYKALWDATESAPDTALAFVLTLTTGVTLTGTVLPQYPPVTASGADAQTCSVSLQVVGIPTEDLTA
Ga0310130_0001148_8518_8823	F008616	AGG	MLKLKLTWELETGEKFDEWTRPIELSLAEKELYNGKSIVKILIEESTPSNTLLLFLAHKMQQRITKKVENFDTWKSKVTDITASDFETANFTKPEVSGEQQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310130_0001148

Overview

Ecosystem & Geography

Associated Families

Sequences