Scaffold Ga0310130_0001143

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0001143
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15327
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000645	Metagenome / Metatranscriptome	962	Y
F001322	Metagenome	722	Y
F005878	Metagenome / Metatranscriptome	387	Y
F019642	Metagenome / Metatranscriptome	228	Y
F099166	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0001143_1666_2010	F005878	GGA	LGIPEVSLEMHPFKCGNCKKVTAHREIRRYASEINEGQEVWLMECQNCFEMRLIEPAERVASKEDEITRCDQCGNYKMKAAKCRICLIAAGQERIKERYWTGGATLERFLDADI
Ga0310130_0001143_1992_2579	F000645	GGAG	MSNYLDDYVSVQDRLKEFINAFPDYRIKTHVLEESLTPNCDVYIVKTELYRTEADAAAWTTGLSSESKSKQYALELAETGSLGRALNLAGYFAKPSTTPKKPIQTTKPELAEFVKAQRPNDPEPIVWDVSDVADKLGAEIIDEIPLCSGGDGPMVLKSGVKEGKEYRGWVCPTPKSGHPAKWMRIGSDGSWVFQK
Ga0310130_0001143_4145_4339	F019642	GAG	MAPGDIAAFIASVLGSIGLLIAGLRYIIKLENLPLISRLDKLESTLELALREKVAKGGTSKARR
Ga0310130_0001143_6092_7339	F001322	GAG	MTIWSPTYRVGINGYTVTGATLSGLTITSGRTDIYSQPVAGYCNFSLIETLESNIPYEINDPISIEVQDSNGNWVSLFGGFLTDVSITVQYSGSTATSQRIEIIGVGSLARLNRTVFTGNLAHQFDGDRIYELLAASLFDSWDEVPAATTWATYDPTVTWENAENSGLGDIDQPGDYELHSQSNVNDTLYNLVTSYATSALGYVYEDAQGRIGYADSTRRGQYLATNGYVELDGNHAIGPAFSITKRAGDVRNNITVAYGASGNSFVTDDDPTSIALYGNLASTVLTTLRNQGDAETQAAFYLSIRAFPEYAVRQMTFPLGNPEIDDTDRDSLLNVFMGLPLDIVNLPANMTDGRFQGFVEGWTWTANLGSLSLTLNLSPIAYSLQAFKWSDVPAPETWQTIDPAMTWLNATIVA
Ga0310130_0001143_707_1192	F099166	AGG	MTIKDLSLKLAAISLLADQAKRLKDELRAELKIQMEELGADRVKAELGDEVVAYITTTKPKFKWAIKSDRKALEWFKAYYPNEVIETIRPSSLEAILDKFNYDGDTVVDPNGEVVDWLEGSLAEPYLTTKFHGDGKAILRDALIGLKRNELDVKEILELES