Scaffold Ga0310130_0001080

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0001080
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15969
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (91.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000368	Metagenome / Metatranscriptome	1223	Y
F002827	Metagenome / Metatranscriptome	527	Y
F005146	Metagenome / Metatranscriptome	410	Y
F010680	Metagenome / Metatranscriptome	300	Y
F103175	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0001080_11157_11639	F010680	AGGAGG	LAIVIQLSQAEVRVCALIAVERWLTKFGSVDRPNYASGKKFGKLEPEINANIRANVAEWAVARHYNLGWNMPWYPNELHKARKNISDVGDLEVRTIRTQSAIPFWAKDAGRTIVGAKVLDDEYYSMVEIYGKFQADDFMIDEFADPSIDGWRVPVSEMEL
Ga0310130_0001080_12510_12737	F005146	AGG	MKLINFYEVMDRKGDVAWGGASVTDAIAWFRRGLDNSIFVSVWDEQDPEDPKLVTDKIEITALVLATITSERARV
Ga0310130_0001080_12984_13157	F002827	AGGAGG	MNKEYYQAKADLCRDLFIKQVGDGETKEAGANLLRMVNALNELNLIKYKEEKENVSN
Ga0310130_0001080_3892_4077	F000368	AGG	METLKQVSLTWFRAAASAAIALYLAGETDVKTLGAAALAGFLGPVLKWLDPSATEFGRGA
Ga0310130_0001080_8398_8574	F103175	AGCAGG	MICKECKTAGDFNTVGKYHFAGAMHQKCEGDCGCHHKTGPGWFAKAGEKVKPIQTQSP