Scaffold Ga0310130_0001047

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0001047
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16391
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (82.98%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F001781	Metagenome / Metatranscriptome	635	Y
F082666	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0001047_10215_10496	F082666	AGGA	MIESAEAIEPRLQKLVDLGCTGIDIMHGELKNLMLEAEQEYSNYVKIEEETDYDDAMDSMERKYWEGMLDAYSHMYKMTYDLSFAISAKEAGE
Ga0310130_0001047_10493_10792	F001781	AGGAGG	MKAGDKDKLNKCLEILDTTDLGLSLVWLWTWSTIKNFMEDETFIMKKTEDEMWDCLCEAVEAGHGFSLEYGAEQHHDDVMEWMLNREYMVDSMFEEEEE
Ga0310130_0001047_4759_4968	F000808	GGA	MDYLYSLTISYDGELVSTTRSSDLLEIVNAWNKCVDFGDAKEYATYNLSDPSGKMYTKNFYRNGVVNGK