NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0001034

Scaffold Ga0310130_0001034


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0001034 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16612
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (63.83%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045790Metagenome / Metatranscriptome152N
F060853Metagenome / Metatranscriptome132N
F078630Metagenome / Metatranscriptome116N
F091922Metagenome / Metatranscriptome107Y
F095362Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0001034_12339_12617F078630AGGAMFNQPRLFIDSVQNAKKQFVEKYVRNQDVKNDMIIYIDAQSKFLHSALEATSGIISTFARETLHTKVEKLVNPFSIDWHKAGWDAWIAQNRK
Ga0310130_0001034_13059_13292F045790AGGMADIHELREELLEEAMEYLDCKFRTQKKFAKLFFEYKLKQGVPIDNYMSYMPQIYTPQEAIDLAKAMEAYVVGGNGK
Ga0310130_0001034_13353_13604F060853N/AVYNIILHSKGKQMAVQQLLDNLYLTPAPWRKWMQTREEIISDWKAGKDFRIQSGPYCSIRDIEYLRSSYNRIYIIHDRGSIEV
Ga0310130_0001034_2023_2226F095362GGAGVNIPVQKKFIDWFYNKPFPSYDSKRNRNGFLEEMLDCGNVSHDSLQYWVQEAFHQGAKAQRELDSEK
Ga0310130_0001034_5220_5414F091922GGAGGMSKIVNYTAELEQLIADTLLPVYEDYCRRYPFSPLAKKISYDVIREIKHAKDPGALLKPRKNTT
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