Scaffold Ga0310130_0000974

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0000974
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17175
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (63.41%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055822	Metagenome / Metatranscriptome	138	Y
F060853	Metagenome / Metatranscriptome	132	N
F090468	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0000974_16206_16478	F090468	AGGA	VKLLEFTYTKQDGSVSKRAVIELVTPNKFVEGWDVSELDEQNFAQFTQTMGELRRRQHEETMQLLVDFDLKHNYRRFKPESMSDIQVEYV
Ga0310130_0000974_1920_2123	F055822	AGGAG	MAGYTREFLVDAYVWRFLNCVTVETLLELEQIGYNTYDKYGKDKFREYSSLDADYIKRYKEYLKCQK
Ga0310130_0000974_4850_5068	F060853	AGGAG	MSIFDFNSCNLYLTPAPWRKWKQTREEIIEDWRNGKDFRVQDGPYCSIRDIEYIRSNFNRAYIIYDRGSIEI