Basic Information | |
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Taxon OID | 3300034073 Open in IMG/M |
Scaffold ID | Ga0310130_0000974 Open in IMG/M |
Source Dataset Name | Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 17175 |
Total Scaffold Genes | 41 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 26 (63.41%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Oklahoma | |||||||
Coordinates | Lat. (o) | 35.784 | Long. (o) | -98.26 | Alt. (m) | Depth (m) | 2896 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F055822 | Metagenome / Metatranscriptome | 138 | Y |
F060853 | Metagenome / Metatranscriptome | 132 | N |
F090468 | Metagenome / Metatranscriptome | 108 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0310130_0000974_16206_16478 | F090468 | AGGA | VKLLEFTYTKQDGSVSKRAVIELVTPNKFVEGWDVSELDEQNFAQFTQTMGELRRRQHEETMQLLVDFDLKHNYRRFKPESMSDIQVEYV |
Ga0310130_0000974_1920_2123 | F055822 | AGGAG | MAGYTREFLVDAYVWRFLNCVTVETLLELEQIGYNTYDKYGKDKFREYSSLDADYIKRYKEYLKCQK |
Ga0310130_0000974_4850_5068 | F060853 | AGGAG | MSIFDFNSCNLYLTPAPWRKWKQTREEIIEDWRNGKDFRVQDGPYCSIRDIEYIRSNFNRAYIIYDRGSIEI |
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