Scaffold Ga0310130_0000894

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0000894
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18510
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (20.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006345	Metagenome / Metatranscriptome	375	Y
F016262	Metagenome / Metatranscriptome	248	Y
F019993	Metagenome / Metatranscriptome	226	Y
F023325	Metagenome / Metatranscriptome	210	N
F025232	Metagenome / Metatranscriptome	202	Y
F026511	Metagenome / Metatranscriptome	197	N
F028461	Metagenome	191	N
F049572	Metagenome / Metatranscriptome	146	N
F088542	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0000894_10747_11235	F023325	AGTAG	MRLISPLLEYFTVSKKMKQVGSYEGAYTKSVYLPFTSNATLGQQYYFQPDEVLDSKNNFITGIELVDTVTNATAPTVPTTDPLSTTQARQGYLYICNLNREVLATLPLYTLIRRLNAGKPTYLYFDDPVVWQNCFVQFESLGTAVTTAHSVWLKVTYSPIEK
Ga0310130_0000894_1164_1550	F049572	N/A	MENNQQLARVNDVNAAITPEMLEASANLSKLKTAINLSPEYIELTKPGENFRGIFWGFTEITVNDQVSGEQRQIPAAAFLVDKAIRINGGVALVSECKKAGIDKGTPLEVTFKEKKGNLKIYSLTLLG
Ga0310130_0000894_12824_13090	F026511	N/A	MNTVTETQYVGEATMITSDCIAIAFNRPTGSNPVNVNGYPLEQGQTLRISQNVGDIDRTQYQIYFGSGSGADECYVFRTLILEGYQNG
Ga0310130_0000894_1618_2394	F088542	N/A	MAKRKSTPQYKDRKYNYPKGFTKYGKAKTGFMPAAQGAKLFVEANLEKIKKGQIPFDSLTTREKRVYRGKTSNTLANTFTFKDKRYYDPTGVLRKTLDNIPALKGKRNLTNLLPESNFKDLFNQQINPTKGKIKEKDRSKWLEFSSSLYDFNKGEKKQFYRDESGSLMDIVTKLQKARKQGREVRVIDTDGSIKTGVLAIDRMREFEAEKLKQFVDKAKPGQNIQLQIIYISTDWNPYTNTVTFNLNNVQVNDLNQTP
Ga0310130_0000894_16831_17025	F006345	N/A	MDNKTAKQIISEAMNIAIAKGCFGLVEVTNIVKAVEFLSNQPDVEFGGITEEYNDLKAAREKEL
Ga0310130_0000894_2396_3235	F028461	N/A	MKKQNAATMFKNPQLQESIIKQYKEAGLDFTVKHSNYNTQIIGAESTLKFIQTEHSIRVFVAYNKIVKDLKQSDRTVEILQGEWSTENFDSKNGLKPCSYKTVLNLDITSAYPYCLWINRLITEDTFNFLMQLPKNERLPAIGMIAKKSVWIEYKKGKATDWDLKQGEYGNIFFFIIQQITDLMAWAAEIAGDDFLFYWVDGIFLKPSISKKKLQEITGIFAEQGYYYKYENVKNFSVVRENDKLFINMIKNGEEKPYTMYDKNLARNFTKVLQQLENA
Ga0310130_0000894_5500_5730	F025232	N/A	MENVNEKILSDYRLIVARLDLMKAEVDQTNKAYNKIRKAFVELLEAYQLELDQRDNQFYDRQEVDYYWLDKAGILD
Ga0310130_0000894_6959_7423	F019993	N/A	MKREVKLLLVAGIGYLGFKAYQIYTALKQLSWAPTGINFSIIKERGAIGGTLFVDIINPTAATIKVDGFTGTVTTASGTLIGDYKGSALVLKPGSNNVRISWGSRATTTLIPLAIGIFKGNWPVLKFNTVMNVKGFPIPTSFSLNTKDYRPTLV
Ga0310130_0000894_9098_9526	F016262	N/A	MIKFNKSTLTEIAGLGAGAVAGAYVSQKVLTKADGTYLVGSGTTGKLVADLAPIAVGLLLQGQSNTFAKEAGKGMIAQAAGGFIKSKFPALGITGDAGYDAPVMMSGLDTGVDNPMISAVPADDFSAPTTDVTYGSAGEMDY