Scaffold Ga0310130_0000880

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0000880
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18728
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (39.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000973	Metagenome / Metatranscriptome	817	Y
F004130	Metagenome / Metatranscriptome	451	Y
F012964	Metagenome	275	Y
F037205	Metagenome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0000880_10004_10354	F037205	N/A	LKASQNSGTSGAEVSDLRPEQAYDTDLRRLEPDERFAVENINNSQDRVAQYMKAARTAGAYQQRTSISEPSVRGKTPRTRASIEGTELPTTGDSGGRSGAVGYARKPTGQFGKPFG
Ga0310130_0000880_10413_10754	F004130	N/A	MNPAAGFLDSFVQDEVKCRCLDEEDFGAPLDNEENDVPLYDMYNRGLVACQQGLERNPLNLEGQRPGMTGYIPSMEEGLSLGASPRPKALVLELPEPEEKERVLSAKRRGLLR
Ga0310130_0000880_7196_7516	F012964	N/A	MGKSFAFPMEEQIPPSQQPARFPGQPEITPEQLAELKARAKQLAIQQALAQQTTAPAQPQVIYVRRNLTVAELLLVILLSCGIVTGIQWSWSAISNLLPRIEVKVR
Ga0310130_0000880_7545_7958	F000973	N/A	MQYGIRKGLEDIAHELKGIKTVLSSLWHSRYADGETTTLTPEAFADEYISTEECGRRLGVSDQTIRNWISIGRKTPEKGWVEGVHYVNVSPDHRKKALIRIPWNRLIQSFAKNKEVAFSDLRSGNALYAPRPFGRLE