Scaffold Ga0310130

Basic Information
Taxon OID	3300034073 Open in IMG/M
Scaffold ID	Ga0310130_0000863 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034073 Open in IMG/M

Scaffold ID

Ga0310130_0000863 Open in IMG/M

Source Dataset Name

Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18929
Total Scaffold Genes	59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	29 (49.15%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

18929

Total Scaffold Genes

59 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

29 (49.15%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.784	Long. (^o)	-98.26	Alt. (m)	Depth (m)	2896
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.784

Long. (^o)

-98.26

Alt. (m)

Depth (m)

2896

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F004134	Metagenome / Metatranscriptome	451	Y
F004255	Metagenome / Metatranscriptome	446	Y
F007265	Metagenome / Metatranscriptome	354	Y
F007569	Metagenome / Metatranscriptome	348	Y
F007919	Metagenome / Metatranscriptome	342	Y
F053262	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0000863_12338_12499	F007569	N/A	MNFTPEQYKLIFTAVRRYQFEKTVLNSKEYWQCNEVLDELFDSVYTQRVEQPT
Ga0310130_0000863_13077_13250	F004255	N/A	MTEKSKIFYDIWKCAYQRRALYKGTAREHREHETVCMCLNMKDVNFYQFDTEKPRYV
Ga0310130_0000863_14640_14903	F007265	N/A	MTHNFYNNIIGTDILHSITDVYELCDEVERMTYRVELQADNGGVYIKSGEKGHEEGSKNITEDMSIGNKQLAIVVAKRILELYGELK
Ga0310130_0000863_15269_15475	F053262	AGGAG	MTELTQEQRQTIEDALNSLPEVVKKGMFSTMEGIEEQLARGDKIIFYMRPHEVPGGFYIDKMKVGEDD
Ga0310130_0000863_17724_17966	F004134	N/A	MKHPANDWDFDDTIEEAFQEWFNDLNGGFALRSEYFFGDAEIGDVNTRKDLMYKWLHSAFVMGYNMGKMEGLEVGLTNND
Ga0310130_0000863_17963_18151	F007919	GGAG	MMTNKLKFTQVSRVICPKTGVHYLDAIDENGIHWVAQQEIGVERWITYKEVWKKDPQQPLDL
Ga0310130_0000863_8257_8625	F000345	N/A	MMTEPNEFGKALQEWWDSDACKQLQKETEEAKQRAVGKYFMLSEEDKLDIVQAICYIMCKAESEGCSHRALMDALGIYPTGFWIDNLMDVHNALWSYYNDRKQDQELKDDLESLEKFLEDKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310130_0000863

Overview

Ecosystem & Geography

Associated Families

Sequences