Scaffold Ga0310130

Basic Information
Taxon OID	3300034073 Open in IMG/M
Scaffold ID	Ga0310130_0000827 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034073 Open in IMG/M

Scaffold ID

Ga0310130_0000827 Open in IMG/M

Source Dataset Name

Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19747
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (41.18%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

19747

Total Scaffold Genes

34 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (41.18%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.784	Long. (^o)	-98.26	Alt. (m)	Depth (m)	2896
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.784

Long. (^o)

-98.26

Alt. (m)

Depth (m)

2896

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001190	Metagenome / Metatranscriptome	753	Y
F007026	Metagenome	359	Y
F019817	Metagenome	227	Y
F021097	Metagenome	220	Y
F029735	Metagenome	187	Y
F030408	Metagenome	185	Y
F091979	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0000827_10383_10922	F029735	GAG	MARDHRLSSDPSKYISYGQDIFTQKKQLNYDDLFAPKASTGVSPWMHGRFEDKDILRRIQTRKLKLNPGLNFVGNNPEEFEVFAGLGRFKRKEDYSFDEGRPNTALRPQEQPGFSDIWVEAYKLSPTLNPDKRITNPMPRIANPDPRGYLMETAERRVEAEMEDKRSVAQLLSNDSEDA
Ga0310130_0000827_16719_16922	F021097	AGG	MHRNYFSDSCVALILGSGLGLLLSVGAQKLLNRHYQATCHDRPGHNLIYVQGFLGDTYYCINSKYIN
Ga0310130_0000827_17776_18000	F030408	N/A	MSFTIALVTDRSGRYAHVWGEPRSWNQFVEQLEDAGCEVIENQTEDWEGSTRDEVAEDCLTVHQLLHDTDFIPH
Ga0310130_0000827_18730_18972	F019817	GAG	MLATAVPALSINQRNLYAYFLNHKKKYGNTPCFVPRLPSQASRLEQYLQALVRLEEYGLIRVDRSVDNYTGWMMLEPKAT
Ga0310130_0000827_19094_19321	F091979	AGGA	MLLAGRYAMANSPFLQGWQQEYMKAHGSMPPQDKVMDFLTSVIRNESIPIQNKQAELRLLDQMQRFTPDVRNTVG
Ga0310130_0000827_19390_19665	F007026	N/A	MTYPEIDWKKNEYKQLEEALDILKAVIERESKRHQMDEHLVPGDNDIVQEAIGLLEEIIDYDPTPNEPGEPPMTMDEMHSAAWKEHQEMHR
Ga0310130_0000827_5127_5306	F001190	N/A	MTASVPTGQSATDDYFDIDKFQTLLDKLEGSKGRQKRQESLEGRRNIYAQGLASMMSNF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310130_0000827

Overview

Ecosystem & Geography

Associated Families

Sequences