NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0000720

Scaffold Ga0310130_0000720


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0000720 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22417
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (10.34%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006590Metagenome / Metatranscriptome369N
F025030Metagenome / Metatranscriptome203Y
F064723Metagenome / Metatranscriptome128N
F103247Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0000720_10340_10708F006590N/AMKTIKIANADIPIKFGMFVLGTFLRERKLKLSDLSQLGEDLLLALELAFAGVQQGYKVKGEKCPYDLQSFCDLVDTDMGGIARIMEMISNEISPPEDESQKNVVAKAESLPLNTSNGFVSEF
Ga0310130_0000720_11158_11406F025030N/AMKLRLLKEWNGKAAGNTGVFLSEYGEQMIKDGFAELLDEDYVVENMPKKEEVKQEPIYIPIPVPSEYFQNEEEENITKQKNK
Ga0310130_0000720_11794_12366F064723N/AMFISQSKLNNLRKLQSQTQKKLTKKGVLFAIYNIAEAVVELDNLMKNITVEKRKEIQKAAEPVALATYRSFVPVSKKPHYYYIKGQGLMYGISPGNLRRSIKIISDVKNLEKSQTSLIGPLYQVQGRGAKLDNEMTTDGFYAHMVYGNTRGWVKKVKNKAERAASMAVIQKMSQEAIRVTKEYPRKFWEI
Ga0310130_0000720_5387_5752F103247N/AMPYTEKTVLFRGLDFDSGRTPNHSAGGVAGTGSITPTNSTPNTQNSSVTKVFKESFLDSYTAILTVTKNAGVLPLNLEQFLIFQNGQELISSQFSVAGSVITIDSSTHYDGSNYVIFFII
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