Scaffold Ga0310130_0000686

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0000686
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23294
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (45.31%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013631	Metagenome / Metatranscriptome	269	Y
F036765	Metagenome / Metatranscriptome	169	Y
F085684	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0000686_20967_21152	F085684	N/A	MTQVIYGYREIERAYKILKDLVERESSLHLMDMTIQTQDLDNIQYEILPALEEIVFFDPT
Ga0310130_0000686_22413_22697	F013631	AGGA	MLLSNLITLTSFKNQMILDVFHYTASRWDWQDGNVNQMWIQEIEESPDCYSYVAVAYNPRKNVSMVMSNPRGYFDTLNWVRSFCASFCILPEHC
Ga0310130_0000686_590_916	F036765	GAGG	MTIQATELLKLLTKVEKLGLSVKVREDKDGDYVIRIFELFSPENFDEKVVITQKGEMTWDKGTYSFECMMSILDKMLEEKRQDEIKAQKRQELIARLTDEEKELLDLK