Scaffold Ga0310130

Basic Information
Taxon OID	3300034073 Open in IMG/M
Scaffold ID	Ga0310130_0000644 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034073 Open in IMG/M

Scaffold ID

Ga0310130_0000644 Open in IMG/M

Source Dataset Name

Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	24650
Total Scaffold Genes	79 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	52 (65.82%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

24650

Total Scaffold Genes

79 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

52 (65.82%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.784	Long. (^o)	-98.26	Alt. (m)	Depth (m)	2896
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.784

Long. (^o)

-98.26

Alt. (m)

Depth (m)

2896

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045790	Metagenome / Metatranscriptome	152	N
F054804	Metagenome / Metatranscriptome	139	N
F060853	Metagenome / Metatranscriptome	132	N
F091922	Metagenome / Metatranscriptome	107	Y
F095362	Metagenome / Metatranscriptome	105	Y
F095369	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0000644_11827_12021	F091922	GGAGG	MSKIVNYTAELEHLIANTLLPAYEDYCRRYPFSPLAKEISYDVIREIKHTKDCGALLKPRKNLA
Ga0310130_0000644_14643_14846	F095362	GGAG	VNIPVQKKFIEWFYNKPFPSYDSNRNRNGFLGEMLTCGNVTHDSLQYWVQEAFHQGAQAQRELDSEK
Ga0310130_0000644_20362_20667	F054804	N/A	MAMKIIITTQVYNNYGTPGEPRWKAKGAGDYVVNLPCGYTDEDVKRKVELAKAVIELHNTPMWWETWLGYHVVEDNILTDFESQQLEWDGKIDFPAEVLNV
Ga0310130_0000644_22284_22553	F095369	AGGAGG	MAYIIRDGEIVAVPIPLNQRVKIGRYYQPPQLNYIANDQLWVQDVYTFKQIPWYMVKNRFERYFLYGTLWFSIVVILNLIGRHYLGAPN
Ga0310130_0000644_4289_4540	F060853	N/A	VYNIILLGKGKQMAVQQLLDNLYLVPAPWRKWMQTREEIINDWKAGKDFRIESGPYCSIRDIEYLRSSYNRVYILHSRGTIEV
Ga0310130_0000644_4605_4838	F045790	AGG	MADIHELREELLEEAMEYLDCKFRTQKKFAKLFFEHKLKQGIPIENYTTYMPTIYTPQEAIDLAKAMEAYVVGGNSK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310130_0000644

Overview

Ecosystem & Geography

Associated Families

Sequences