Scaffold Ga0310130_0000515

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0000515
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30525
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (74.19%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002037	Metagenome / Metatranscriptome	600	Y
F003522	Metagenome	481	Y
F011384	Metagenome / Metatranscriptome	291	Y
F030690	Metagenome / Metatranscriptome	184	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0000515_16564_16833	F011384	N/A	MGLKMYTKLDDQRQAKFINEYMQEHPNCTIKDVIQGCVTNRVRLKYLESQGYFSLPKPLEHKEILDRRFKNKNYVSVTVGREYGKWIGY
Ga0310130_0000515_17205_17360	F002037	AGG	MNKIYWVFGLTMVALAIFGTEKAFSQTTTIYAPDGSVTVCQVNTNGTVICL
Ga0310130_0000515_17357_17533	F030690	AGGA	MERSEVEIICHHMLGRTIVSCEALHGDSTIVIELDDDSIIEISGEELSLYGELTPRDD
Ga0310130_0000515_8586_8930	F003522	N/A	VKEKILAYLTEPRTINDIAEHIQSNYPITKNILVEMRDANVIHAYKDNQNRLMHYYVPQPHPLQTIFGHTVNFTPNQIKGVTTYNADDAKHNLQHKTTQETYGESVAYTLTRYD