Scaffold Ga0310130_0000476

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0000476
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32007
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (25.93%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F008081	Metagenome / Metatranscriptome	339	Y
F030017	Metagenome	186	Y
F093880	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0000476_11526_11834	F093880	GGTGG	MGNKDMKALNELNRDIWAMIVQAQQTKNWALIEINLKRLFALQKKYINLINLQDYEIKGTKLLLQDEIRVRNQFEKQWFKDVAQRSGSYQDLKDNIDKYFVE
Ga0310130_0000476_13571_13903	F030017	GAG	METCEIMQKVKDLYLKGFTRKKIAKVLGLDDQKVGYLLYTKMKLHEIYPRKLMDENIFQILSDQQISRILTLFTYGYEIREIAEDQNLEFRKVKKLIDVAESKNMIEKKV
Ga0310130_0000476_15649_15897	F008081	N/A	MEESEILNPFGFGNATKVIDENRKPSEFWQEFSDLHEVLAENEFYVLFDDGLLVKKGRSKFRTSQYIKGDKFTSFQKVYARV
Ga0310130_0000476_16394_16942	F001775	GAGG	MKELLDDERIKIAIIAFIAGVILAFLLFPKRELETVYKTKIERLTDTLYITSSDTVYIPKTKIKTQVLRDTVLIDFKPKISLFETTFPFEYGSTKVSGEVLGEVLKMTAINDYKLPVVTNTITETKTETIIKKSKGFYLGATINSLLDPGAKASYVDDKYLFQYQFQPVTKIHTLGVSKKLF