Scaffold Ga0310130_0000445

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0000445
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33159
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (15.09%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002391	Metagenome / Metatranscriptome	564	Y
F032999	Metagenome	178	Y
F057881	Metagenome	135	N
F065712	Metagenome	127	Y
F066704	Metagenome	126	N
F075866	Metagenome	118	N
F080976	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0000445_10607_11125	F066704	N/A	VEFWKHEAYIIAEKVTGGNPIYRDLVSHVYLLVYELDITANDLPRVFARYSYNQYNWRDSTFNKQYRLNDPLPELYDKETDQEYHETEMQKLLDSYMDQSPTDDQELFTKEITRMHLMGMTYREIRNETGISLDTIHLAIKQFKNDLHITYHNSNRDCQSSYEFQSPGLQTI
Ga0310130_0000445_18596_18817	F032999	N/A	MTTAYYEYWWQKAGRFNSNLYDNYLRAKRDAEFQSNLQSKGCQVDHPTENHSSQQSRGCNQEDGHVASVNFKS
Ga0310130_0000445_19405_19680	F080976	N/A	MKKPGRPKKNLNINIDTKNVDIKITRKDGVTDVKVDTPKVDVELHKDKDNKSVKVDSAPVDVEINNGDVKVDVNEQSGLIGKVVKFLLRRK
Ga0310130_0000445_196_462	F002391	N/A	MAIANSVLTAQQGTFIVNNTVEKTVNHDAILVLEDTVFSSIKVAGVDVKSTYIAATATAVKAGAIIRPLRDAKFSGVTLTSGSVCLVL
Ga0310130_0000445_4589_5113	F075866	N/A	MADLDFLDDFGISANDAEQPASVYDRFLIEISNQLATEFRDYTKKVANNTGGLAASIIPVPTGQLSFRLEADDYYPFVDQGVNAVGTNNYGSQFSFNYPGVSHNMATAISQWKGLEMSHAYAVASNIKQRGLKPKRITDNVITDEVLNKIANDLAEITGLMFEIKFDKNTETWQ
Ga0310130_0000445_5180_5890	F057881	N/A	MKELEIKLPTSISQCTPDQMAKWLMMAEAMKDQKDDITQFLIFQCQLLSLFSGESINRIKRADVNSIQAASAHMLQILTSYNYQEPNETIEIEGKQFRFEKNFGHVSTGQIIDLKLIEDISQDPCQALAIMYVEKGMEYCQEDDRGRVLNPNEDRYKLFKEHFPGDEFLNFFSFFLDLSEKRRMAILGIQTARAKMEMMQIAQDQKIRSGLIGQLSYIDYPKRWESVWTKLRSNLM
Ga0310130_0000445_8592_9332	F065712	GAG	MNQSHISESLAGLDQGLIEKYQLTEYISPIMPTIFMGMYREEDFALLSGHIGDGTIVWFGSDAKDLAEDWIEMVNKFVNIAVSHQVLDTLESKGVDAIYYPFNAVIPDRWQQVPNGNKIFWYSGNSPEYYGQDLINEIKERIDIPIIRAGHDTFSRDQLVDVYSQCFINLRLTPHDGCPNTNIEMGLMGRRSIYNGDLPASIPWQSVNDICQNIMKEYQCRHLDNTFISKIYHTFVNYERMSTLFI