NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0000419

Scaffold Ga0310130_0000419


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0000419 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34627
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (67.27%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045090Metagenome153N
F088907Metagenome109N
F093860Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0000419_31908_32453F045090N/AMNYDLCDLLNRKMENTNGYMPENFPNRSNFKNQNIVDEFFETLSPEDYLEAMESEVCDHQCFAFWIYRNGKISDQLEDYDKSARRITRELANLSYSNSPALDIMYFSGCMKVIIANNKALYLETCIRPSLDQMFTIKDLELKHLSKSGKVIWRIVERKKKLNFYEGIGVNDLHGFKWSRI
Ga0310130_0000419_5321_5599F088907GGAGGMSHFYRQRSYSYNETDEMMTEIKKEMSNFLTKEEAEIILNRRSAMVDPPPYRMNEEIQVLHKEIDDLRREIYFLRTHLNKIQHKFDIDEPTL
Ga0310130_0000419_5599_6141F093860N/AMAKHIVFQPLDLDNDDTVKDTVLWGASFQVHPDIEPTIPQEMLALVNNKSSIAYPLAYWETEFSKLGFELDIDFPYCKEFVWDYVMPDAVRITIKAKDLNTNYNQIIIPKPLAKKLLDEMNLPLFGKMHPEKFHKKLISYIDISSKSYDMEEKVFEVLTELEDLCAECVSYESFVEWKVS

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