Scaffold Ga0310130_0000419

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0000419
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34627
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (67.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045090	Metagenome	153	N
F088907	Metagenome	109	N
F093860	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0000419_31908_32453	F045090	N/A	MNYDLCDLLNRKMENTNGYMPENFPNRSNFKNQNIVDEFFETLSPEDYLEAMESEVCDHQCFAFWIYRNGKISDQLEDYDKSARRITRELANLSYSNSPALDIMYFSGCMKVIIANNKALYLETCIRPSLDQMFTIKDLELKHLSKSGKVIWRIVERKKKLNFYEGIGVNDLHGFKWSRI
Ga0310130_0000419_5321_5599	F088907	GGAGG	MSHFYRQRSYSYNETDEMMTEIKKEMSNFLTKEEAEIILNRRSAMVDPPPYRMNEEIQVLHKEIDDLRREIYFLRTHLNKIQHKFDIDEPTL
Ga0310130_0000419_5599_6141	F093860	N/A	MAKHIVFQPLDLDNDDTVKDTVLWGASFQVHPDIEPTIPQEMLALVNNKSSIAYPLAYWETEFSKLGFELDIDFPYCKEFVWDYVMPDAVRITIKAKDLNTNYNQIIIPKPLAKKLLDEMNLPLFGKMHPEKFHKKLISYIDISSKSYDMEEKVFEVLTELEDLCAECVSYESFVEWKVS