Scaffold Ga0310130

Basic Information
Taxon OID	3300034073 Open in IMG/M
Scaffold ID	Ga0310130_0000344 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034073 Open in IMG/M

Scaffold ID

Ga0310130_0000344 Open in IMG/M

Source Dataset Name

Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	38009
Total Scaffold Genes	77 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (32.47%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

38009

Total Scaffold Genes

77 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (32.47%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.784	Long. (^o)	-98.26	Alt. (m)	Depth (m)	2896
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.784

Long. (^o)

-98.26

Alt. (m)

Depth (m)

2896

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002333	Metagenome	569	Y
F003601	Metagenome / Metatranscriptome	477	Y
F004278	Metagenome	445	Y
F022857	Metagenome	212	Y
F044444	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0000344_16425_17363	F002333	N/A	MSTQTQQELNTAQACIYTRTNLRRAFKDFDDTDVAGVYLRDDSCLVVRRDGSEQTYNRALIQYAFHDYTTRLKDFFAYLGPDYRGPSMWRYNSYIIYKGWTYGHSLGHITPNAQLQKHWADKFIHLSDPAKLTALLQSDQTDLGHLVAPDGMRLPDRPVNLDGELVEDEGTAPASEPWCSCGSFQRQLNNVALFQQEIKGFRPWCIHLTWVQKYRELLCKRTEARNASPSGTPDKCVAWWYAPPADATSDGRFVLLHTKSGAQAPLTHWRTYKPKEVFTQHDAWDLFFNMMEAGYVPFPGTALPQLHSAVKK
Ga0310130_0000344_17360_17608	F044444	N/A	MNSKIIEVDQDIMEYARQLATQPITNFMTDYKRYDLEIPEDTHWELVKLAADLRMHHEDYAQNVLIGHVEHELDRKAKDRGD
Ga0310130_0000344_19793_19990	F022857	AGG	MDPIAVPKLTVSFAVDLEVDYDPFVGKTPTQVAAALQDELDELLFEASPDVVGVFTSVTSIAHNE
Ga0310130_0000344_31097_31369	F004278	GGA	MNWSVLFGQMVQAIVDWWKKLWFESKLKARLKMIELENQIESEIEREEAAKPIYTEHPIDPELQTGESQKLGGAMQLTAPWYKPESNESK
Ga0310130_0000344_7364_7582	F003601	AGG	MTDYTDDQLLAMAMANIGDFIHDNSPHYVLIEEDPRNEEDYDTWEYGTEPLPHDHTWHAASIDVEVSPGKPE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310130_0000344

Overview

Ecosystem & Geography

Associated Families

Sequences