Scaffold Ga0310130_0000302

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0000302
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40208
• Total Scaffold Genes: 104
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (41.35%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Associated Families: 13

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010897	Metagenome / Metatranscriptome	297	Y
F016774	Metagenome / Metatranscriptome	244	Y
F024040	Metagenome / Metatranscriptome	207	Y
F025679	Metagenome / Metatranscriptome	200	Y
F026210	Metagenome / Metatranscriptome	198	Y
F027756	Metagenome / Metatranscriptome	193	N
F030670	Metagenome / Metatranscriptome	184	Y
F032548	Metagenome / Metatranscriptome	179	Y
F034827	Metagenome / Metatranscriptome	173	Y
F036564	Metagenome / Metatranscriptome	169	N
F039497	Metagenome / Metatranscriptome	163	N
F066486	Metagenome / Metatranscriptome	126	Y
F071967	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0000302_18919_19107	F039497	N/A	MSEENFNCQAGNQLRQILYKDIVRYAHESDMTAYQVIGVLESLKFDLLKAMEKVAEENEDEI
Ga0310130_0000302_20903_21235	F024040	N/A	MNIYVSGYNWSAKVDIDTKKLDKSNWYSEACTRAVESVLDQEEKEGVELKIDDYDNFGLGVILLTWDEKNIKNEDEHRVLLTSNVLANAGRWEEFNEVKAYEDKCKEEGL
Ga0310130_0000302_23074_23352	F034827	N/A	MKYTITSRDKEAMVEFDSIKEGEVFSFFDPESVQRGNHSIFMKIKNGSNNIVNLDDGRVFNFTDKKRITISDPDEQRGNLVYKLNAKINIIV
Ga0310130_0000302_23546_23749	F030670	GGA	MNKIIRYIKELEDEFGKPLNKWAVYEETITQKGNWVFPDAKIVKTFSTPHHARNWMENDGKRAYQSS
Ga0310130_0000302_25058_25288	F027756	GGAG	MKLEDLIDRKILYLNYPINKYAIQEGKVSEISPAKKCIKINSDWHLIDNIRIIELFKENERPKLGFGLPSNEKDAK
Ga0310130_0000302_25278_25433	F032548	N/A	MQNKDMEKAIQLLDELIFQADEDCPVECRSRHFTDILLEASEFVKEYKNSK
Ga0310130_0000302_25430_25639	F036564	AGGAG	MKLGRVCLDLNYIVDMDNQEMVERAYECLYEDLMQGVKYGNIGNWIDVIEDKNAKEDMIPEFLLEKENE
Ga0310130_0000302_29368_29571	F016774	GAGG	MPSKKPKIQFLSEHIASLNHWRDELLKLDKTYFHKDHEKERTIKNMINKYLDDVLEHNKKFKEKAKN
Ga0310130_0000302_31915_32151	F066486	AGGAGG	MKAKIKDPSYLKIGKFKKKNVYDVDVDMSEHNRDYFLDLGKQVITDDQFINIGFNYALIKGLELAKEIAEKNKNKKKK
Ga0310130_0000302_32480_32731	F026210	GGAG	MNANPLNYDAKYPQTADNSVNDKAKIEIMEKNIGKEVMFQIQGTQFYGKISSVPNSEHYCLVVGENWEWYVREEAIHFVENIY
Ga0310130_0000302_38461_38727	F025679	N/A	MTKTFKIGEYAVGGKIKVSIPKTLTNIKIDVLDSNYGTNKLVNQYIYYSFDRIRIERDLWQITTGYWTDQITKWISNNWQVEVAENLI
Ga0310130_0000302_39680_40132	F010897	GAG	MKLINTTSVCSDKLKEIIKWCLPQGLHLKDIRKIDFGNTKIGWHGRAWYSGRVHIGVPAYSKYVKPYISGGERGYLPLKTYNWEESLVDIIAHEVRHLWQYKKNKFYHGIKKIRKYNMGTKAKLSEVDATLYAIRKVREYRKSNIKFCLT
Ga0310130_0000302_9135_9368	F071967	AGAAG	MNNQNEALAICSEFADEYGIDIEDGQTLVVYMKSEYINELKNMLERKAYKLKSYKVYGDEALINFIPNNRKNFNEDL