Scaffold Ga0310130

Basic Information
Taxon OID	3300034073 Open in IMG/M
Scaffold ID	Ga0310130_0000283 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034073 Open in IMG/M

Scaffold ID

Ga0310130_0000283 Open in IMG/M

Source Dataset Name

Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	41225
Total Scaffold Genes	68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	34 (50.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

41225

Total Scaffold Genes

68 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

34 (50.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.784	Long. (^o)	-98.26	Alt. (m)	Depth (m)	2896
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.784

Long. (^o)

-98.26

Alt. (m)

Depth (m)

2896

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002867	Metagenome / Metatranscriptome	524	Y
F003805	Metagenome / Metatranscriptome	467	Y
F006785	Metagenome / Metatranscriptome	364	Y
F011387	Metagenome / Metatranscriptome	291	Y
F035291	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0000283_20663_21088	F006785	GGAGG	MSGGEWNTSRERKQLALDARELEREQLRLEKRQLRDLRWAVERSSLAASDWADLLALQAAHGKEGPLQLWRELVPYWRACQRCNGGADIPPELFPQATGIFPRNDQPPAPANRTRSSKGAARKVRSDAGVSKPRKVPAPQG
Ga0310130_0000283_21413_22024	F035291	N/A	MPTASPALLERVDRLAICSGHWVLIRDGQPETDCSHQWHHSPDDHLQTCLAERWRDVSLGFVPSYCGYSDYSRTGLVGLSNFRVLTDPASTPDPYGGILEVGYGWNGRGVVLDLLRAPADVLETVEALEAYPLISEDDHSQLECDGIASDWGGESIASRVRMLQDLGLCVFAARDDAAPWRDGFDRLREMILENLNEYPTALA
Ga0310130_0000283_25909_26259	F011387	GGAG	MAAVSTTATDRFTNIVEYTGATMDALDEWFEVAAHSSSYTFAAKVTGAATFKLALECSFNGNGTWFTIDTAKTINSAGEYVYFYDGKAASKIRMRISEVSSGTPDVVPHIAIAYHG
Ga0310130_0000283_6080_6265	F002867	N/A	MAVTNSTDYGNGYTLDQLENERGELYYRACKGSICRYAEDHYIAIMYLEGMGWDPKQQDP
Ga0310130_0000283_8183_8404	F003805	GAGG	MRPIEHTTESCFHKAATDKWLVDRFNSGDYRGLLEAALILNTLHQLEQTKARWAIREAADNLTEQFGLDRDSA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310130_0000283

Overview

Ecosystem & Geography

Associated Families

Sequences