Scaffold Ga0310130

Basic Information
Taxon OID	3300034073 Open in IMG/M
Scaffold ID	Ga0310130_0000204 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034073 Open in IMG/M

Scaffold ID

Ga0310130_0000204 Open in IMG/M

Source Dataset Name

Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	49659
Total Scaffold Genes	105 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	77 (73.33%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

49659

Total Scaffold Genes

105 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

77 (73.33%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.784	Long. (^o)	-98.26	Alt. (m)	Depth (m)	2896
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.784

Long. (^o)

-98.26

Alt. (m)

Depth (m)

2896

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001507	Metagenome / Metatranscriptome	681	Y
F005092	Metagenome / Metatranscriptome	412	Y
F010766	Metagenome / Metatranscriptome	299	Y
F029721	Metagenome / Metatranscriptome	187	Y
F042331	Metagenome / Metatranscriptome	158	Y
F048943	Metagenome / Metatranscriptome	147	Y
F056558	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0000204_1092_1295	F056558	AGCAG	MGMGFLDNLENAWDENLSLESSAIPQNDAMGREKFWEDLGRPSDEPTSLAVKLFSEMCCTNCSCKNE
Ga0310130_0000204_11670_11828	F001507	N/A	MTQKHKPYTINELVMEIYEDNLSHFEFEENMGGEPCTCNYHITLNTIMQYWS
Ga0310130_0000204_11830_12030	F048943	GGAG	MSNYLLEYMRIHLVSIEQDQAAVSEQMEALDPNSKDYAELDFEYNWLAGQIIATRHFIQVGEENAH
Ga0310130_0000204_27718_28017	F042331	AGGAGG	MNEQIKKALASYGRSVLGAATAMYASGVTDIQTLAYSLLGALVPVVLRAANPSDTAFGRMPSVEDVDVALKTAKVVKKPAKKAVAKKKSGGGGKPQQML
Ga0310130_0000204_3499_3699	F029721	AGGA	MRSYSIEDLLIGQFYRPTSFARKYQGGEINYATKRDDVWVGTDYQAYSIRFNGHKWATIAVRVSDL
Ga0310130_0000204_36973_37101	F010766	AGAAGG	VGEKSKMRIKIIKFVVKALGYEWSGDELKLPVWYVKAKKKKK
Ga0310130_0000204_5562_5774	F005092	AGGA	MDKLEYALRQIAACNFCNGRGVDYFGNGEDYDFEDCICNPYGLILDEDGSVIFDNGLLSEPELFATMEAN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310130_0000204

Overview

Ecosystem & Geography

Associated Families

Sequences