Scaffold Ga0310130

Basic Information
Taxon OID	3300034073 Open in IMG/M
Scaffold ID	Ga0310130_0000081 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034073 Open in IMG/M

Scaffold ID

Ga0310130_0000081 Open in IMG/M

Source Dataset Name

Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	100242
Total Scaffold Genes	125 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	59 (47.20%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

100242

Total Scaffold Genes

125 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

59 (47.20%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.784	Long. (^o)	-98.26	Alt. (m)	Depth (m)	2896
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.784

Long. (^o)

-98.26

Alt. (m)

Depth (m)

2896

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009072	Metagenome / Metatranscriptome	323	Y
F010017	Metagenome / Metatranscriptome	309	Y
F014121	Metagenome / Metatranscriptome	265	Y
F016800	Metagenome / Metatranscriptome	244	Y
F017818	Metagenome / Metatranscriptome	238	Y
F024768	Metagenome / Metatranscriptome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0000081_16792_17097	F009072	N/A	MKKYNEEYFSVIDKRTGRKIVDCGDEMDALTMVSFDSQNRTITRNKILMSPVIDIEMPKALPTSLIDTTGYKEHQDNWIVDKINELPQIKLPEGQGEPVVV
Ga0310130_0000081_17094_17291	F010017	AGGAG	MNHRKHKQAENLKKKKMYTPEGYVGDPPDAKCPHCGESKKSCSYVNNLSRAWARDACAKKNSKSS
Ga0310130_0000081_95930_96196	F024768	N/A	MDYETEIIDGRKAVVRHFFKSHEIQVGSRWARADGSKGFVTVEGLNSYGSTDPWYEVVYSWEENGVKKIWQKETFAFQCRYCLIIEDT
Ga0310130_0000081_97743_97982	F017818	AGGTGG	MNKDAYYDWIDENDTYPEHSHKWIVGLYNKYEGVEGLHRYFGVFETKEEAKVFAADYKDKYTKPGFISSIRVFPLCEVL
Ga0310130_0000081_98595_98879	F016800	AGGA	MLDAFTDYPIPSYGDVAGEKAPIRRAKILTYDRNKYCDVLVYQVDKDGDLRGTVVNFKQFYLYKNEARLDDGIPFTDEELKTLPWTKISSPHSI
Ga0310130_0000081_98907_99113	F014121	AGGA	MTNTAYQIWETFKAELTQPATDDMKEALASSIRVISSLIYRDGVLADEPWHFYIAQELNEYADEVEAL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310130_0000081

Overview

Ecosystem & Geography

Associated Families

Sequences