Scaffold Ga0310130_0000054

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0000054
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 127624
• Total Scaffold Genes: 139
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (17.27%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038233	Metagenome / Metatranscriptome	166	Y
F041189	Metagenome / Metatranscriptome	160	Y
F066792	Metagenome / Metatranscriptome	126	Y
F072331	Metagenome / Metatranscriptome	121	N
F073559	Metagenome / Metatranscriptome	120	N
F078724	Metagenome / Metatranscriptome	116	Y
F093878	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0000054_26497_27003	F038233	N/A	MALKITAQIGTDKGITSEAYVRIADYQISKYGSANFRIELFQSQDDATSVSSYPGMNGGVARNQQIGESLYVALTQQVEETITVRRTVPVEVEFTEEVTGSPDADGNSETTTVTRTRIEMQEQDVQETITKTVPDLSSAEGVDVFAFGYSHLRTKLEGLFGADNVVDC
Ga0310130_0000054_27121_27633	F073559	N/A	MEKISLKLFEFYNLDAELNGLTNQQTGEKVASGLIQEKLSLVTKYWLTELGKKVAAEKASVEELKNDLIKKYGKEDEKGGISIPMVIEELDSEGQPVKDIDKDGNWFTKKVINPAYQDFEREFNELLQTEKELEYKAFTLDDFEKVETSENYGTFFKLIKIEETKVVPLN
Ga0310130_0000054_63449_63880	F072331	N/A	LKPRKSKDLIPIVAEELNLSQQMVSDVTSFYWQEIRKSLSSLKHSRIHVTNLGDFTIKHWKLDDKIDKLENFKENFRQRGLQEIVTRFRTDETLFDLKAIKVLMDEEKQRKDFIKLHKNKSDESKREHNQDMESKGSDPGGSD
Ga0310130_0000054_64673_65020	F093878	N/A	MSEENVLQEEQDVKNVPSKEEIIAFIQEQIEVKTVQLQLQQLNTGLATSRAKELKALAFIAQMTQQGGKPEGTPHTITQEDMDNNPELAEEGIKVGDEVIIPNSPAVEKQRSLKK
Ga0310130_0000054_91529_91810	F066792	N/A	MTRENPSVAAFKVWIFPSLVSLVSLLIWNDVNEIKADVKLLMAQSNIDKTRIDNIERQLYKTADAPIAPTREPVDYQQLVAVLPDNKLVAVKY
Ga0310130_0000054_96499_97110	F041189	N/A	MFSTKGQEVKTGGGTAKSLQAGVVYAHIYSGQVRTSNKGDKKTLELVLEGPASEGFEGWAIDKNNPDGPKYTGQSSRVSGTIWTDQFNDSNVTKNEIMFKLAVIASELGLRDQVDNISASSIEDWVEKAIYILKGHNLYWFLKGTEEEYNGKTIIKLSLPKYKFVSTEEAKLDKFDKNNQYHYKALQNKPVTSFEPVNSDFDM
Ga0310130_0000054_99982_100494	F078724	N/A	LFPALGIKRTSNFTPSGTYLSVDGLVKPEDVKLVCSFPDDESEGFKAFEQQMLLSNPLFLEMVSIQGYKLYVFDFHIYEKDWFNFILGKYSKLSNVLKRAIKNYYGDKSTEYKYIETFLYPEKYFSIYAKLLDVEVSLLENTGELCDPCDMEKENLKIPVEDLEILKKGT