Scaffold Ga0310130_0000040

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0000040
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 173066
• Total Scaffold Genes: 231
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (23.81%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002455	Metagenome / Metatranscriptome	557	Y
F009604	Metagenome / Metatranscriptome	315	Y
F020882	Metagenome / Metatranscriptome	221	Y
F031493	Metagenome / Metatranscriptome	182	Y
F035761	Metagenome / Metatranscriptome	171	Y
F039506	Metagenome / Metatranscriptome	163	N
F048260	Metagenome / Metatranscriptome	148	Y
F073452	Metagenome / Metatranscriptome	120	Y
F084133	Metagenome / Metatranscriptome	112	Y
F091907	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0000040_111346_111561	F035761	N/A	MDQFVTTVKLNQELYNRFKELNIRGKISFQDFVNKCLEKYLDDIDFQSEISESICQKLSHNTPFSLSKGIK
Ga0310130_0000040_132560_132817	F048260	AGGA	MYTRKNTRNKTNFVGHNSTGVEIYLSTPFPKAKKASRLTVRAGNARVDLTGRQINALREVLAAGYSSNATSATRTATRTTRASRA
Ga0310130_0000040_5625_5966	F039506	N/A	MTKLYVKLTAKPDTWFKAGTEVFDYDEYGKRITLESYHEWLKSKSILVRGIHIYENGVEAEDGELCRIDEFDIELTDSERDIPWPKPLDPPTTTADAEARQRRFEENIRHIQG
Ga0310130_0000040_5972_6322	F002455	AGGA	MTDNRTYYYDINGKMEPDYESMAAYLLDEGVLFVTSAIDRCNQKECLGLYILINDYFVPASDAESVTYDELPKLFEMYKEKQWNGVSKFVADKRGIPDLSWRDKNSAFQKKLGNDK
Ga0310130_0000040_66158_66304	F073452	N/A	MRRIITKDKKGKKKLVNVPSWDLNYVNNQLGQPAYDVSISSTSGSLAS
Ga0310130_0000040_69562_69804	F091907	N/A	MNTNTKVSRKATQLNEITDRNFTVVDLLNLNTNVKAPTVRMHVKRNVAAGRYVATGTLKSGKRGKPSIVYTVAQAKAATA
Ga0310130_0000040_70919_71170	F009604	N/A	MIKCGCGNDIHPERYELGYKICLTCGDKVAQKHKKFGYISYGHKTAGAIVVTSRKAFDNYQKVSYRMGKNSNMGYASRLTTSF
Ga0310130_0000040_86383_86652	F084133	GGA	MFNNKIEGMNIPQPNVNFGLKDTQPVVCAECKGDVFQNGVIFRKVSKILAGTDKDALVPINVPYCVNCMAALDELLPTELKKPKFTLEQ
Ga0310130_0000040_91698_91901	F031493	N/A	MRNFAKDGPPEYCKPDPLKKGWHYIGDGKPHDPTKGHPEMRGRTWMIDPSYHSGKSFEKFQQGLKND
Ga0310130_0000040_91919_92452	F020882	N/A	MSNLQELGDTGDRMMQGLPYNQGGAVTGASNWDTFSSPDISQNPDKFGTLTDKSKITATDKESMQVIAPFGPYTGQNPEDYEKGVDQVKYKVTPDEVLAGIDYEMKKLVLKDKQVAKQNVVNNLKKDPQYYSKLRMLGVDEENESDKPQDFRTPQEKAIAEIMQQMYKDKLNRRNWS