Scaffold Ga0310127_124160

Overview

Basic Information

• Taxon OID: 3300034072
• Scaffold ID: Ga0310127_124160
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1064
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000671	Metagenome / Metatranscriptome	945	Y
F011938	Metagenome / Metatranscriptome	285	Y
F013891	Metagenome / Metatranscriptome	267	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_124160_399_635	F000671	GAGG	MEKILCYSCNKTKNKLDVKKSTLLPINLLMCETCITSRFEPRWVIILAGRSNGAEFVKEYIQKKRYVGNEVSASELLV
Ga0310127_124160_635_832	F011938	AGGGGG	VKEYYDVIYIVYIHSENCYGTVEKLGAYASVVRYNLHGNELEELLENEDFTIVDEIVHQHVEESN
Ga0310127_124160_816_1040	F013891	N/A	MKKRVHAIPKPALLLMDVVKYPDFLALRLYEDNFIQFDGTKKEIVIDYVSKVKKLIESYGVRCELEGVPSERVL