Scaffold Ga0310127_113114

Overview

Basic Information

• Taxon OID: 3300034072
• Scaffold ID: Ga0310127_113114
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1141
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028157	Metagenome	192	Y
F041769	Metagenome	159	Y
F051124	Metagenome	144	Y
F085645	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_113114_369_590	F028157	GAG	MLSEPKFVTVLGDHDEHARWITHTDCTDILNAYRQGGVHILVTLNAEGELTIAFKPGRHWEATWSPPITLERR
Ga0310127_113114_592_960	F085645	AGGAG	VNHDYAKPVDDTTSQPNGSEILTEAHHLINGPRQQAYSHPFDDYYRVKELFYSMTGIQLTVQQAITFMVCVKLGRMAHNMQQGDWHRDSIVDAAGYLGCLSMAHEHVERNIGAVKAHLKEQH
Ga0310127_113114_66_302	F051124	AGG	MTKKTDPIEQYLNTTGSGWCIKYVLIAVVEDEDSDQSFYIQCLENQTAAETIGLCEAVSHIQKVKIANAWIARENEEE
Ga0310127_113114_957_1139	F041769	N/A	AQLRISELSTALAAVTEQRDNLEDSLNAAIHELDAHKTHISHLTATVERLRLHIAQGVEL