Scaffold Ga0310127_052880

Overview

Basic Information

• Taxon OID: 3300034072
• Scaffold ID: Ga0310127_052880
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2015
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045719	Metagenome / Metatranscriptome	152	Y
F050344	Metagenome	145	Y
F078657	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_052880_57_386	F050344	N/A	VLAVEAGWTPDLLPTLDYVMWKESRCDPTQHNTTLNRDGSADVGLTQINDRSWCLGTKWYPKGYLQTIGALPTVGCEQLFDPYLNLVSAKAIYDYAQQHNGNGWQPWKL
Ga0310127_052880_648_824	F078657	AGGAG	MSDNQNIFYEAWISDLQRDLDSLREDKRELLRKVAQLEQQLAEYGVKITNLIQQRGDE
Ga0310127_052880_824_1045	F045719	GGAG	MATATWYKLKGGNWAVKVRHDAQAGEQVEVTNKKGETKTVFLDKCEVKFDDAQLWSFTDEAPAAKEEAVEEPF