Scaffold Ga0310127_050102

Overview

Basic Information

• Taxon OID: 3300034072
• Scaffold ID: Ga0310127_050102
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2097
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036146	Metagenome / Metatranscriptome	170	Y
F059774	Metagenome / Metatranscriptome	133	N
F098941	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_050102_1343_1516	F059774	AGGAG	VAFFTDGDYDNDPELDWERPQRLNRQLSLQQLEGRLELWKQKHELLCLKLYRAATGI
Ga0310127_050102_152_328	F036146	GAGG	MTPCRTWKITTSEGKTIALGAISAKQAEHFMLAIRPDIKIALIEEIKPLPESLPEQLR
Ga0310127_050102_990_1340	F098941	GAG	MPFLFKAMTARFYHWGEKLSAFTSDNRLVMSFGSPIASVPITVKELQDFVCTLEQAIDDEPNVKQRIALGSIKHIFQASLKQAQKDHEQIIEETPTGADLEEYMLSYARAIKEGAF