Scaffold Ga0310127_028201

Overview

Basic Information

• Taxon OID: 3300034072
• Scaffold ID: Ga0310127_028201
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3210
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001165	Metagenome / Metatranscriptome	760	Y
F055681	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_028201_1546_1746	F001120	N/A	MTQKKSPINFDKTIAGFNVTERGIKSFTKSIKLGPFQVTFNARESGVHGSISIPGTGLSRRNIKII
Ga0310127_028201_2367_2567	F055681	GGA	MIGFSIEFKRWYLVIRGPKGRVYSAFGFAKQMPVMLPNQTMTLDEYLKDCDDQIVFKVDGKEVMRW
Ga0310127_028201_92_310	F001165	N/A	MSALNDTPKPRIPDSVDLQRLQAMQLVARMKEAADRNGIGFVGGFVSSDGQKFMMTNMDEADTQMLLPDDLK