NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310127_026810

Scaffold Ga0310127_026810


Overview

Basic Information
Taxon OID3300034072 Open in IMG/M
Scaffold IDGa0310127_026810 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3336
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003377Metagenome / Metatranscriptome490Y
F039989Metagenome162Y
F059762Metagenome / Metatranscriptome133N
F062553Metagenome / Metatranscriptome130N
F072826Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0310127_026810_1405_1698F072826GGAMRFFRTADEPLYETVRLQLDAAWGHPTPDGQTLTCFDPAIVAPRDNAGRLLLAVNDEFATWEPAATMLPQLLASGAVEDITEAEYQAAVQTPDPLQG
Ga0310127_026810_2439_2678F003377GAGGMTEAAKDTVFGIMERWGFPVLVALAAGYILRNDVLLPLVEEHRQFVKQLGETQREISQAVAEQTKLLYALQPKAAKVEN
Ga0310127_026810_2671_3021F062553AGGAMTLPGLQSHVWDRLPTLQRTLAGRRIVSRIVTSAVRGWPIPVLEQCDAGETQIVAKHYTKQVERIARREYGMGIILTLVLGALVQEVVKLLVQWWLDRQENRTQMRLLAREARHHD
Ga0310127_026810_3018_3254F039989GGAGGVRFLLAFSVVLVGCVATLPGDNGVTADLACETARMVVQLRHEIAPSPASDKCDNCVDGFIGDGKIKIVCPVCKGTGKK
Ga0310127_026810_935_1291F059762GGAGMSDSKIRRKSKLHPFTLSTATSVANTIPMFDMAGGIVEVGTMSTNATQLNLWVADVEAGPFYQLYDKDGAVVKITLSASTTDGRAYAMPDEVFAAQFIKFVSATTNSTGTVGTVMFKG

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