Basic Information | |
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Taxon OID | 3300034072 Open in IMG/M |
Scaffold ID | Ga0310127_026067 Open in IMG/M |
Source Dataset Name | Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3404 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (50.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Oklahoma | |||||||
Coordinates | Lat. (o) | 35.784 | Long. (o) | -98.26 | Alt. (m) | Depth (m) | 2896 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001872 | Metagenome / Metatranscriptome | 623 | Y |
F002794 | Metagenome / Metatranscriptome | 529 | Y |
F006139 | Metagenome / Metatranscriptome | 380 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0310127_026067_102_380 | F002794 | N/A | MECNKMSEGVAWNQGELSEETRKLVLERTEMINHNMAIFALIDEIADTRQNPHASIIRRLQTMKNQLSLNEPMPLYDVTTLDLAIKALQAHS |
Ga0310127_026067_1085_1525 | F001872 | AGCAGG | MNEFIKQVIYHSNGALWNNGSYGRRDMKGKPGSLSVHATGRAVDLSYRGSARRPQASRQAAMPTIQKLVQNANELGIEMIIDYMPKPFGRAWRCDRQAWKKYSKPTIKGAPGGDWFHIEISPQAADSVIFVKAAFLKVFGEIPPKP |
Ga0310127_026067_1771_1935 | F006139 | N/A | MDTQIVVALVGGGFAVLVALISKIGHDNKKDHGIVHQALGRIEQKIDGHVEDHK |
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