Scaffold Ga0310127_025151

Overview

Basic Information

• Taxon OID: 3300034072
• Scaffold ID: Ga0310127_025151
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3495
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003377	Metagenome / Metatranscriptome	490	Y
F039989	Metagenome	162	Y
F062553	Metagenome / Metatranscriptome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_025151_1131_1370	F003377	GAGG	MTEAAKDTAFGIMERWGFPVLVALAAGWILRNDVLLPLVEEHRSFVKSLSETQREISQAVAEQTRLLYALQPKAAKVEN
Ga0310127_025151_1363_1713	F062553	AGGA	MTLPELQAHVWDRLPTLQRTVAGRRIVSRIVTSAVRGWPIPVLEQCDAGETQIVAKHYTKQVERMARREYGMGIILTLVLGALVQEVVKLLVQWWLDRQENRTQMRLLAREARNDD
Ga0310127_025151_1710_1946	F039989	GGAGG	VRFLLAFSVVLVGCVATLPGDNGVTADLACETARMVVQLRNEIAPSPASDRCDNCVDGFIGDGKIKIVCPICKGTGKK