Scaffold Ga0310127_022179

Overview

Basic Information

• Taxon OID: 3300034072
• Scaffold ID: Ga0310127_022179
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3841
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001805	Metagenome / Metatranscriptome	631	Y
F014238	Metagenome	264	N
F014609	Metagenome	261	Y
F018353	Metagenome	235	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_022179_1386_1610	F001805	AGGA	MTMATEKIFIGVGEKVIELTGDSKAEFIAQREADNVAFQLVEAEYKAKQEARESAIKKLAEIAGLTKDELASIL
Ga0310127_022179_2140_2436	F018353	AGG	MSKPKAKKQTIELPDVMASELVRIVNTAHEDGKLFTGFVVIAELFDGKKKTVKIVANQDMPQHSVFGIINYAAEKYQFTMSPEEDDEDFYDPEWFDGQ
Ga0310127_022179_2433_2654	F014609	GGAG	MINELVGIIGLLITVLILVVKATVEITKMKSQLFPNGGSSLNDKVTRLQIEVTKIRSTIDSINTQLGKPKRKR
Ga0310127_022179_8_745	F014238	N/A	VQGIDTIDAGRYEVLARNPEIDQASNLTDLTQQSGLGYLYDTADFEIGYADAERRSENYATNLIELNADLVNADIQTRLQTADITNSVIIQYDDPIAEEAAQNDTSINNYGLLQEIRSTILAQQLDAQEQAVNFVNYRGTPRTSLEAISVNLANDGMTNTVRDDLLGVTMDTLLYLDNIPIGLIAEGYFEGFVEGWTWTLGRRNLELTMSVSNSIYSTLDVQWEDYNALIQWQNLDNTTRWLDVI