Scaffold Ga0310127_021747

Overview

Basic Information

• Taxon OID: 3300034072
• Scaffold ID: Ga0310127_021747
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3898
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002827	Metagenome / Metatranscriptome	527	Y
F004793	Metagenome / Metatranscriptome	423	Y
F078660	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_021747_1656_1820	F004793	AGAAGG	MTLDEARELVGNQPTWALKNMVKALKMLPLMNTKEDERRLAAAVLIIKSRRGRE
Ga0310127_021747_2888_3061	F002827	GAGG	MNKEYYQAKADLCRGLAIKQMVEGESGEAGKNLLRMVNALNQINLINYKEEKDNEAS
Ga0310127_021747_3048_3275	F078660	AGGAGG	MKPVNFYEVMDHKAEVEWGGASVSEAITWFRCGLDRSILVSVWDEQSEDDFKLITDKIDITAIVLATITSEREKA