Scaffold Ga0310127_020286

Overview

Basic Information

• Taxon OID: 3300034072
• Scaffold ID: Ga0310127_020286
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4100
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031084	Metagenome	183	N
F054008	Metagenome	140	N
F091978	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_020286_1641_2039	F054008	AGAAGG	MNCTICKGVIAWPDIQGRTHFVCDGRVPAGKPTTPYGQAMQISQAVADAKWTPAQQRQVDAAIDACAREIGYFTADDVWAKLGQHFPVTKGLAGRLNAAVRRRTIVNTGAVRHANRGGQHDHAQRLTVWAAA
Ga0310127_020286_2036_2245	F091978	AGGAG	MFADNFEPTSASAKHLKALNEIVDTIFNPHSDVIRRLRTIRNAMSLCDPEPLYDIETIDKAIAALEKAR
Ga0310127_020286_2880_3320	F031084	AGG	MDEWIRQAVKYANGSLWNNGSYGQRDMKGKPGSLSVHATGRAVDLSYRDMPDHRGKPNGRQLSRVFIGACVANANVLGVQMVIDYWPQPFGRAWRCDRMGWQVYQKKTVSGAPGGDWWHVEITPKMADNPELVKAAFLKVFEGIPA