Scaffold Ga0310127

Basic Information
Taxon OID	3300034072 Open in IMG/M
Scaffold ID	Ga0310127_015964 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034072 Open in IMG/M

Scaffold ID

Ga0310127_015964 Open in IMG/M

Source Dataset Name

Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4899
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (30.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4899

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (30.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.784	Long. (^o)	-98.26	Alt. (m)	Depth (m)	2896
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.784

Long. (^o)

-98.26

Alt. (m)

Depth (m)

2896

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000557	Metagenome / Metatranscriptome	1026	N
F003267	Metagenome / Metatranscriptome	496	N
F007111	Metagenome / Metatranscriptome	357	N
F008996	Metagenome	324	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_015964_1837_2571	F008996	N/A	MKLLANIAYHHNPERMPNLIRVIEAIKSYPVQADIFVDTNDPEVVGMLADQPVTVHAHTQLSHPWMLTAVHRTRIKETYKYFDWVAYFEDDMMLPKEGFVNFTEQFDSMFTDGLYPSFTRIETYEDKEGECTPDVNEVLPSSVWCQYNGKDYVSLPFFINYHAFWMFSTKRLKEVLTRNPEELDKIPNNGLFRESLASFPIWSLGLKPMLEFTEQGELAEHCKVFHLTNNYKHGSTNIKTLFKR
Ga0310127_015964_2573_3226	F003267	N/A	MKVVHYYHIYCGGNWQLILNQHMMAVCNYGLINVLDEIRVGIVGPPEQRKAVKEVLENSMVADKVKVVVTRTNAWEQATLTEMYRASQDEEAVYLYAHTKGAANPSLTTQLWGRSMLFFNVVAWERSLQMLEQVDAVGCHWITKEQFPHMADQNNPEGYPYFGGNFWWAKSEHIRQLGEPARDHRFRAETWVGKKPDTKVFDSNPGWPSPEKFVVTF
Ga0310127_015964_3_533	F007111	N/A	METTILANGQPVNKFGSGSMKGIDQTALEGIGSIVGPKGGGKSPAHDVLVKWVARVIELAKKNLEAANANAGGTLSASIAPEDIELSAKQIVVAIMANPYWKYVDQGVHGRSSSYLSARGSKFRYDKKIPPPQAIADWIANKGIPVVPTYSRKLERMRTKQEQGLVMGRSIAFAIRE
Ga0310127_015964_741_1310	F000557	GGA	MKLQDLTIDQFQRIGAIEFSSVLGDYDKRIGVVSIVEGVDVSLVREMPAKAVLKRYKAIVSEWNALPALGYKRKFKAGGKWWIPTVFTDELTAGQLIELMDINTTDEKQLLQNLHRIMASLSREGGFMGWFPKKYDGAAHAERAELFKKHAKVGDVWGVVSFFLLSSESYLKVLTDYSKHLMTKAEGLT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310127_015964

Overview

Ecosystem & Geography

Associated Families

Sequences