Basic Information | |
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Taxon OID | 3300034072 Open in IMG/M |
Scaffold ID | Ga0310127_015696 Open in IMG/M |
Source Dataset Name | Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4962 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Oklahoma | |||||||
Coordinates | Lat. (o) | 35.784 | Long. (o) | -98.26 | Alt. (m) | Depth (m) | 2896 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F010247 | Metagenome / Metatranscriptome | 306 | Y |
F013082 | Metagenome | 274 | Y |
F022646 | Metagenome | 213 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0310127_015696_1567_1809 | F013082 | AGGA | MSLIKTVQQEIDRLYLESKMNRYIVSNEASLYYDLCSVVDKTITLDEFYKLFPYHNPDINSDYWKQQHNRWKEIWKQDAV |
Ga0310127_015696_26_532 | F010247 | AGGAG | MNVQGVIKYVYDNRLGKDGQANKFPNFKFGIGDQQIVLWSAILHPAIAKGKKVSVAVQASKKNGSLFVQTNEKKQPIIQELPSDANTEAKPDTSFDPEELEKELVQVAKDFDADLTVEPKKPFSKDEMIFCMSLLKSGIESGKIGVTKEEIDLKIKDYKFLFQMNFHN |
Ga0310127_015696_3578_3964 | F022646 | N/A | MQIAKANIITSVKHQKFVASFPCVVCGNDTQVQCCHIRSIPKVGNVGKGIRDDRFCIPMCFTCHTQQHLIGELEFFEKYNINPILISMKIASISPCNKINQSKQEGAYNGKLDYRQHIRNNKKSSLQS |
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