Scaffold Ga0310127_015657

Overview

Basic Information

• Taxon OID: 3300034072
• Scaffold ID: Ga0310127_015657
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4975
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001807	Metagenome / Metatranscriptome	631	Y
F007026	Metagenome	359	Y
F020342	Metagenome / Metatranscriptome	224	Y
F091979	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_015657_1592_1789	F001120	N/A	MTRKSHISFDKTIAGFNVTEHGVKSYSKSIKLGPLQLTVNARESGVRGTISIPGTGLSLPNIKLF
Ga0310127_015657_1850_2035	F020342	N/A	MSAYVNYLNMFDRINLAACAKRRATDNLLDATRWEGEYDTARLWMKYRLIKTTTHSYIDE
Ga0310127_015657_2035_2295	F001807	N/A	MTVLAIEHTSFTDTHVTVTAVVDDMRLLYRATRFEPEEWAPALCTTTIELDPEEPIPLDEDGFCSYLDDLDPHWQLVDTSDYDLDS
Ga0310127_015657_330_557	F091979	AGGA	MLLAGRYAMANSPFLQGWQQEYMKAHGSMPPQDKVMDFLTSVVRNESIPMQNKQAELRLLDQMQRFTPDVRNVVG
Ga0310127_015657_614_889	F007026	N/A	MAYPEINWTKNEYKQLEQALDILKAVIERESKRHQMDEHLVPGDSDVVQEAIGLLEEIIDYDPTPNEPGEPPMTMNEMHSAAWKEHQEMRR